Trees
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Identifier Index
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]
R
r_
(in
Bio.Affy.CelFile
)
Record
(in
Bio.KEGG.Enzyme
)
Rep
(in
Bio.Pathway
)
r_
(in
Bio.distance
)
Record
(in
Bio.Medline
)
Repair
(in
Bio.GA
)
rad2deg
(in
Bio.Affy.CelFile
)
Record
(in
Bio.Ndb
)
repair()
(in
AmbiguousRepair
)
rad2deg
(in
Bio.distance
)
record
(in
Bio.Ndb
)
replace_entry()
(in
Bio.NMR.xpktools
)
radians
(in
Bio.Affy.CelFile
)
Record
replacement_dictionary()
(in
SummaryInfo
)
radians
(in
Bio.distance
)
Record
(in
Bio.PopGen.GenePop
)
representation()
(in
MotifCoder
)
Raf
(in
Bio.SCOP
)
Record
(in
Bio.Prosite.Prodoc
)
representation()
(in
SchemaCoder
)
RAINBOW_COLORS
(in
Bio.Graphics.DisplayRepresentation
)
Record
(in
Bio.Prosite
)
representation()
(in
SignatureCoder
)
RAISE
(in
Bio.Affy.CelFile
)
Record
(in
Bio.SCOP.Cla
)
RequestLimiter
(in
Bio.WWW
)
RAISE
(in
Bio.distance
)
Record
(in
Bio.SCOP.Des
)
Res
(in
Bio.SCOP.Raf
)
RanaConfig
(in
Bio.Restriction
)
Record
(in
Bio.SCOP.Dom
)
res_name
(in
align
)
random_motif()
(in
RandomMotifGenerator
)
Record
(in
Bio.SCOP.Hie
)
reset()
(in
BlastParser
)
random_population()
(in
Bio.GA.Organism
)
Record
(in
Bio.Sequencing.Phd
)
reset()
(in
InterProParser
)
randomize()
(in
Tree
)
Record
(in
Bio.SwissProt.KeyWList
)
reset()
(in
NdbParser
)
RandomMotifGenerator
(in
Bio.NeuralNetwork.Gene.Schema
)
Record
(in
Bio.SwissProt
)
reset()
(in
ExtractUrls
)
Range
(in
Bio.GenBank.LocationParser
)
Record
(in
Bio.SwissProt.SProt
)
Residue
(in
Bio.PDB
)
range()
(in
Diagram
)
Record
(in
Bio.UniGene
)
Residue
(in
Bio.PDB.Residue
)
range()
(in
FeatureSet
)
record()
(in
Feature
)
residue_depth()
(in
Bio.PDB.ResidueDepth'
)
range()
(in
GraphData
)
record_end()
(in
_FeatureConsumer
)
residue_dict()
(in
Peaklist
)
range()
(in
GraphSet
)
record_end()
(in
_RecordConsumer
)
residue_type()
(in
_FeatureConsumer
)
range()
(in
Track
)
RECORD_START
(in
EmblScanner
)
residue_type()
(in
_RecordConsumer
)
rao
(in
Bio.SubsMat.MatrixInfo
)
RECORD_START
(in
GenBankScanner
)
RESIDUE_TYPES
(in
MultipleAlignCL
)
rd
(in
Bio.Sequencing.Ace
)
RECORD_START
(in
InsdcScanner
)
ResidueDepth
(in
Bio.PDB.ResidueDepth'
)
re_complement
(in
Bio.GFF.easy
)
RecordParser
(in
Bio.Compass
)
ResidueDepth'
(in
Bio.PDB
)
re_dotdot
(in
Bio.GFF.easy
)
RecordParser
(in
Bio.Enzyme
)
Residues
(in
Bio.SCOP.Residues'
)
re_fuzzy
(in
Bio.GFF.easy
)
RecordParser
(in
Bio.Fasta
)
Residues'
(in
Bio.SCOP
)
re_join
(in
Bio.GFF.easy
)
RecordParser
resolve()
(in
GenericASTMatcher
)
re_seqname
(in
Bio.GFF.easy
)
RecordParser
resolve()
(in
GenericParser
)
Reaction
(in
Bio.Pathway
)
RecordParser
(in
Bio.PopGen.GenePop
)
resolve()
(in
PropertyManager
)
reactions()
(in
System
)
RecordParser
(in
Bio.Prosite.Prodoc
)
resolve_class()
(in
PropertyManager
)
read()
(in
Bio.Affy.CelFile
)
RecordParser
(in
Bio.Prosite
)
rest()
(in
CharBuffer
)
read()
(in
Motif
)
RecordParser
(in
Bio.SwissProt.SProt
)
rest_dict
(in
Bio.Restriction.Restriction_Dictionary
)
read()
(in
Bio.AlignIO
)
RecordParser
(in
Bio.UniGene
)
RESTR_EXPR()
(in
_RecordConsumer
)
read()
(in
Bio.Blast.NCBIXML
)
reduce_sequence()
(in
Bio.utils
)
Restriction
(in
Bio
)
read()
(in
Bio.Cluster
)
Reduced
(in
Bio.Alphabet
)
Restriction
(in
Bio.Restriction
)
read()
(in
Bio.Emboss.Primer3
)
Reference
(in
Bio.ExPASy.Prodoc
)
Restriction_Dictionary
(in
Bio.Restriction
)
read()
(in
Bio.Emboss.PrimerSearch
)
Reference
(in
Bio.GenBank.Record
)
RestrictionBatch
(in
Bio.Restriction.Restriction
)
read()
(in
Bio.Entrez
)
Reference
(in
Bio.Prosite.Prodoc
)
RestrictionCompiler
(in
Bio.Restriction._Update
)
read()
(in
Bio.ExPASy.Enzyme
)
Reference
(in
Bio.SeqFeature
)
RestrictionType
(in
Bio.Restriction.Restriction
)
read()
(in
Bio.ExPASy.Prodoc
)
Reference
(in
Bio.SwissProt
)
retrieve_pdb_file()
(in
PDBList
)
read()
(in
Bio.ExPASy.Prosite
)
Reference
(in
Bio.SwissProt.SProt
)
retrieve_single()
(in
Bio.EZRetrieve
)
read()
(in
Bio.ExPASy.ScanProsite
)
reference()
(in
_HeaderConsumer
)
RetrieveSeqname
(in
Bio.GFF
)
read()
(in
SGMLHandle
)
reference()
(in
_RecordConsumer
)
reverse()
(in
Location
)
read()
(in
UndoHandle
)
reference_author()
(in
_RecordConsumer
)
reverse()
(in
Reaction
)
read()
(in
FilteredReader
)
reference_author()
(in
_SequenceConsumer
)
reverse()
(in
MutableSeq
)
read()
(in
Bio.Medline
)
reference_bases()
(in
_FeatureConsumer
)
reverse()
(in
Bio.SeqUtils
)
read()
(in
Bio.Motif
)
reference_bases()
(in
_RecordConsumer
)
reverse_complement()
(in
Motif
)
read()
(in
PatternIO
)
reference_comment()
(in
_RecordConsumer
)
reverse_complement()
(in
MutableSeq
)
read()
(in
Nexus
)
reference_comment()
(in
_SequenceConsumer
)
reverse_complement()
(in
Seq
)
read()
(in
Bio.Prosite.Prodoc
)
reference_cross_reference()
(in
_RecordConsumer
)
reverse_complement()
(in
UnknownSeq
)
read()
(in
Bio.Prosite
)
reference_cross_reference()
(in
_SequenceConsumer
)
reverse_complement()
(in
Bio.Seq
)
read()
(in
Bio.SeqIO
)
reference_location()
(in
_RecordConsumer
)
rfind()
(in
Seq
)
read()
(in
Bio.Sequencing.Ace
)
reference_location()
(in
_SequenceConsumer
)
rfind_anychar()
(in
Bio.stringfns
)
read()
(in
Bio.Sequencing.Phd
)
reference_num()
(in
_FeatureConsumer
)
right_multiply()
(in
Vector
)
read()
(in
Bio.SwissProt.SProt
)
reference_num()
(in
_RecordConsumer
)
right_shift
(in
Bio.Affy.CelFile
)
read()
(in
Bio.SwissProt
)
reference_number()
(in
_RecordConsumer
)
right_shift
(in
Bio.distance
)
read()
(in
Bio.UniGene
)
reference_number()
(in
_SequenceConsumer
)
rint
(in
Bio.Affy.CelFile
)
read_and_call()
(in
Bio.ParserSupport
)
reference_position()
(in
_RecordConsumer
)
rint
(in
Bio.distance
)
read_and_call_until()
(in
Bio.ParserSupport
)
reference_position()
(in
_SequenceConsumer
)
rint()
(in
Bio.pairwise2
)
read_and_call_while()
(in
Bio.ParserSupport
)
reference_title()
(in
_RecordConsumer
)
risler
(in
Bio.SubsMat.MatrixInfo
)
read_block()
(in
FilteredReader
)
reference_title()
(in
_SequenceConsumer
)
RNAAlphabet
(in
Bio.Alphabet
)
read_colorscheme()
(in
ColorTranslator
)
reflect()
(in
GenericScanner
)
rollback()
(in
Adaptor
)
read_count()
(in
Bio.SubsMat.FreqTable
)
refmat()
(in
Bio.PDB.Vector'
)
rollback()
(in
DBServer
)
read_freq()
(in
Bio.SubsMat.FreqTable
)
regex()
(in
Bio.Restriction._Update.RestrictionCompiler
)
root_with_outgroup()
(in
Tree
)
read_fssp()
(in
Bio.FSSP
)
register_ncbi_table()
(in
Bio.Data.CodonTable
)
rotaxis()
(in
Bio.PDB.Vector'
)
read_text_matrix()
(in
Bio.SubsMat
)
release()
(in
SplitFDist
)
rotmat()
(in
Bio.PDB.Vector'
)
read_to_end()
(in
FilteredReader
)
remainder
(in
Bio.Affy.CelFile
)
RouletteWheel
(in
Bio.GA.Selection
)
reader_keywords
(in
Bio.Blast.ParseBlastTable
)
remainder
(in
Bio.distance
)
RouletteWheelSelection
(in
Bio.GA.Selection.RouletteWheel
)
ReadIntensity()
(in
CelConsumer
)
remark()
(in
_FeatureConsumer
)
Round
(in
Bio.Blast.Record
)
readline()
(in
SGMLHandle
)
remark()
(in
_RecordConsumer
)
round()
(in
_BlastConsumer
)
readline()
(in
UndoHandle
)
remove()
(in
Chain
)
round()
(in
_DescriptionConsumer
)
readlines()
(in
SGMLHandle
)
remove()
(in
TempFile
)
Rows()
(in
CelConsumer
)
readlines()
(in
UndoHandle
)
remove()
(in
_ChromosomeComponent
)
rpsblast()
(in
Bio.Blast.NCBIStandalone
)
Reads
(in
Bio.Sequencing.Ace
)
remove()
(in
HashSet
)
RpsBlastCommandline
(in
Bio.Blast.Applications
)
Rebase_name
(in
Bio.Restriction.RanaConfig
)
remove()
(in
RestrictionBatch
)
rsplit()
(in
Seq
)
Rebase_password
(in
Bio.Restriction.RanaConfig
)
remove()
(in
MutableSeq
)
rstrip()
(in
Seq
)
RebaseUpdate
(in
Bio.Restriction._Update.Update
)
remove()
(in
DatabaseRemover
)
rt
(in
Bio.Sequencing.Ace
)
recalculate_fitness()
(in
Organism
)
remove_database()
(in
DBServer
)
rule()
(in
_RecordConsumer
)
reciprocal
(in
Bio.Affy.CelFile
)
remove_edge()
(in
Graph
)
run()
(in
AlignAceCommandline
)
reciprocal
(in
Bio.distance
)
remove_edge()
(in
MultiGraph
)
run()
(in
CompareAceCommandline
)
Record
(in
Bio.Affy.CelFile
)
remove_empty_line()
(in
Bio.FilteredReader
)
run()
(in
DataHandler
)
Record
(in
Bio.Blast
)
remove_leading_whitespace()
(in
Bio.FilteredReader
)
run()
(in
SVDSuperimposer
)
Record
(in
Bio.Cluster
)
remove_locus_by_name()
(in
Record
)
run_cplot()
(in
FDistController
)
Record
(in
Bio.Compass
)
remove_locus_by_position()
(in
Record
)
run_datacal()
(in
FDistController
)
Record
(in
Bio.Emboss.Primer3
)
remove_node()
(in
Graph
)
run_fdist()
(in
SplitFDist
)
Record
(in
Bio.ExPASy.Enzyme
)
remove_node()
(in
MultiGraph
)
run_fdist()
(in
FDistController
)
Record
(in
Bio.ExPASy.Prodoc
)
remove_polyA()
(in
PatternRepository
)
run_fdist_force_fst()
(in
FDistController
)
Record
(in
Bio.ExPASy.Prosite
)
remove_population()
(in
Record
)
run_job()
(in
FDistAsync
)
Record
(in
Bio.ExPASy.ScanProsite
)
remove_reaction()
(in
System
)
run_naccess()
(in
Bio.PDB.NACCESS
)
Record
(in
Bio.Fasta
)
remove_space_keys
(in
_BaseGenBankConsumer
)
run_program()
(in
Async
)
Record
(in
Bio.GenBank
)
remove_succ()
(in
Node
)
run_psea()
(in
Bio.PDB.PSEA
)
Record
(in
Bio.GenBank.Record
)
remove_useless_dot()
(in
Bio.FilteredReader
)
run_pv()
(in
FDistController
)
Record
(in
Bio.Geo
)
removestart()
(in
DictionaryBuilder
)
run_simcoal()
(in
SimCoalCache
)
Record
(in
Bio.Geo.Record
)
renderPM
(in
Bio.Graphics.GenomeDiagram._Diagram
)
run_simcoal()
(in
SimCoalController
)
Record
(in
Bio.InterPro
)
renumber_tracks()
(in
Diagram
)
runJob()
(in
SimCoalCache
)
Record
(in
Bio.KEGG.Compound
)
reorient()
(in
Location
)
rxn_wrap
(in
Bio.KEGG.Enzyme
)
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