Package Bio :: Package CAPS :: Class CAPSMap
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Class CAPSMap

source code

A map of an alignment showing all possible dcuts.

Members:
alignment  The alignment that is mapped.
dcuts      A list of possible CAPS markers in the form of 
           DifferentialCutsites.

Instance Methods [hide private]
 
__init__(self, alignment, enzymes=[])
Initialize the CAPSMap
source code
 
_digest_with(self, enzyme) source code
 
_digest(self) source code
Method Details [hide private]

__init__(self, alignment, enzymes=[])
(Constructor)

source code 

Initialize the CAPSMap

Required: alignment The alignment to be mapped.

Optional: enzymes The enzymes to be used to create the map.