Package Bio :: Package Motif :: Package Applications :: Module _AlignAce
[hide private]
[frames] | no frames]

Module _AlignAce

source code

This module provides code to work with the standalone version of AlignACE, for motif search in DNA sequences.

AlignACE homepage:

http://atlas.med.harvard.edu/

AlignACE Citations:

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae, Hughes, JD, Estep, PW, Tavazoie S, & GM Church, Journal of Molecular Biology 2000 Mar 10;296(5):1205-14.

Finding DNA Regulatory Motifs within Unaligned Non-Coding Sequences Clustered by Whole-Genome mRNA Quantitation, Roth, FR, Hughes, JD, Estep, PE & GM Church, Nature Biotechnology 1998 Oct;16(10):939-45.

Classes [hide private]
  AlignAceCommandline
Create a commandline for the AlignAce program.
  CompareAceCommandline
Create a commandline for the CompareAce program.
Variables [hide private]
  __package__ = 'Bio.Motif.Applications'