Trees | Indices | Help |
---|
|
Parser for FSSP files, used in a database of protein fold classifications.
This is a module to handle FSSP files. For now it parses only the header, summary and alignment sections.
See: Holm and Sander (1996) The FSSP database: fold classification based on structure-structure alignment of proteins.
functions: read_fssp(file_handle): reads an fssp file into the records. Returns a tuple of two instances. mult_align: returns a Biopython alignment object
|
|||
|
|||
FSSPHeader | |||
PosAlign | |||
FSSPSumRec Contains info from an FSSP summary record |
|||
FSSPAlignRec | |||
FSSPAlignDict | |||
FSSPSumDict |
|
|||
|
|
|||
header_records =
|
|||
summary_title = re.compile(r'##
|
|||
summary_rec = re.compile(r'
|
|||
alignments_title = re.compile(r'##
|
|||
alignments_rec = re.compile(r'
|
|||
equiv_title = re.compile(r'##
|
|||
__package__ =
|
|
header_records
|
Trees | Indices | Help |
---|
Generated by Epydoc 3.0.1 on Tue Sep 22 19:52:21 2009 | http://epydoc.sourceforge.net |