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1 # 2 # Restriction Analysis Libraries. 3 # Copyright (C) 2004. Frederic Sohm. 4 # 5 # This code is part of the Biopython distribution and governed by its 6 # license. Please see the LICENSE file that should have been included 7 # as part of this package. 8 # 9 10 import os 11 12 ############################################################################### 13 # Configuration of the console. 14 # 15 # Mainly used by PrintFormat.PrintFormat 16 # 17 # ConsoleWidth : width of the console used default to 80. 18 # should never be less than 60. 19 # NameWidth : space attributed to the name in PrintList method. 20 # Indent : Indent of the second line. 21 # MaxSize : Maximal size of the sequence (default=6 : 22 # -> 99 999 bp + 1 trailing ',' 23 # people are unlikely to ask for restriction map of sequences 24 # bigger than 100.000 bp. This is needed to determine the 25 # space to be reserved for sites location. 26 # 27 # MaxSize = 5 => 9.999 bp 28 # MaxSize = 6 => 99.999 bp 29 # MaxSize = 7 => 999.999 bp 30 # example : 31 # 32 # <------------ ConsoleWidth ---------------> 33 # <- NameWidth -> 34 # EcoRI : 1, 45, 50, 300, 400, 650, 35 # 700, 1200, 2500. 36 # <--> 37 # Indent 38 # 39 ConsoleWidth = 80 40 NameWidth = 10 41 Indent = 4 42 MaxSize = 6 43 ############################################################################### 44 # Proxies 45 # 46 # Enter here the address of your proxy if any. 47 # If you don't use proxy use an empty string 48 # i.e. 49 # ftp_proxy = '' 50 # -> no proxy 51 # 52 # ftp_proxy = 'http://www.somewhere.something:one_number' 53 # -> www.somewhere.something is the address of the proxy. 54 # one_number is the port number. 55 # 56 ftp_proxy = '' 57 ############################################################################### 58 # Rebase ftp location 59 # 60 # Do not modify the addresses. 61 # 62 ftp_Rebase = 'ftp://ftp.neb.com/' 63 ftp_emb_e = ftp_Rebase+'pub/rebase/emboss_e.###' 64 ftp_emb_s = ftp_Rebase+'pub/rebase/emboss_s.###' 65 ftp_emb_r = ftp_Rebase+'pub/rebase/emboss_r.###' 66 ############################################################################### 67 # ftp rebase account. 68 # 69 # In order to update the rebase files, Rana need to connect to the 70 # ftp server corresponding. 71 # 72 # the general procedure for accessing a ftp server is generally to 73 # connect as anonymous user (rebase_name) and providing your e-mail address 74 # as password. 75 # 76 # Therefore, you need to enter your e-mail address in rebase_password. 77 # The address will not be send to anyone but is necessary to login the 78 # ftp server of rebase when connecting as anonymous user. 79 # 80 # Do not forget to enclose the address between "'". 81 # 82 Rebase_name = 'anonymous' 83 Rebase_password = '' 84 #Rebase_password = 'your_address@somewhere.something' 85
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