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Identifier Index
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D
d1_to_index
(in
Bio.PDB.Polypeptide
)
description_header()
(in
_DescriptionConsumer
)
dnal
(in
Bio.Wise
)
d3_to_index
(in
Bio.PDB.Polypeptide
)
destroy_transition()
(in
MarkovModelBuilder
)
do_alignment()
(in
Bio.Clustalw
)
Data
(in
Bio
)
detach_child()
(in
Entity
)
do_br()
(in
InterProParser
)
DATA
(in
MMCIF2Dict
)
detach_parent()
(in
Atom
)
do_br()
(in
NdbParser
)
data
(in
Seq
)
detach_parent()
(in
DisorderedEntityWrapper
)
do_crossover()
(in
SafeFitnessCrossover
)
data
(in
DBSeq
)
detach_parent()
(in
Entity
)
do_crossover()
(in
GeneralPointCrossover
)
data_file_division()
(in
_FeatureConsumer
)
df_search()
(in
Bio.Pathway.Rep.MultiGraph
)
do_crossover()
(in
UniformCrossover
)
data_file_division()
(in
_RecordConsumer
)
diagALL
(in
Bio.SubsMat
)
do_not_cut()
(in
Analysis
)
data_org()
(in
_RecordConsumer
)
diagNO
(in
Bio.SubsMat
)
DocSQL
(in
Bio
)
data_quartiles()
(in
GraphSet
)
diagONLY
(in
Bio.SubsMat
)
documentation()
(in
_RecordConsumer
)
data_table()
(in
Bio.NMR.xpktools
)
Diagram
(in
Bio.Graphics.GenomeDiagram._Diagram
)
Dom
(in
Bio.SCOP
)
databank_reference()
(in
_RecordConsumer
)
DialignCommandline
(in
Bio.Align.Applications._Dialign
)
Domain
(in
Bio.SCOP
)
Database
(in
Bio.Search
)
Dice
(in
Bio.PDB
)
domainsClusteredByEv()
(in
Astral
)
database()
(in
_DatabaseReportConsumer
)
Dictionary
(in
Bio.Prosite
)
domainsClusteredById()
(in
Astral
)
database_cross_reference()
(in
_RecordConsumer
)
Dictionary
(in
Bio.Prosite.Prodoc
)
DOUBLEQUOTED
(in
MMCIF2Dict
)
database_cross_reference()
(in
_SequenceConsumer
)
Dictionary
(in
Bio.PubMed
)
download_entire_pdb()
(in
PDBList
)
database_info()
(in
_HeaderConsumer
)
Dictionary
(in
Bio.SwissProt.SProt
)
download_many()
(in
Bio.PubMed
)
database_length()
(in
_ParametersConsumer
)
dictionary_match
(in
Bio.pairwise2
)
download_obsolete_entries()
(in
PDBList
)
database_reference()
(in
_RecordConsumer
)
DictionaryBuilder
(in
Bio.Restriction._Update.RestrictionCompiler
)
draw()
(in
Chromosome
)
DatabaseLoader
(in
BioSQL.Loader
)
DictionaryElement
(in
Bio.Entrez.Parser
)
draw()
(in
ChromosomeSegment
)
DatabaseRemover
(in
BioSQL.Loader
)
difference()
(in
HashSet
)
draw()
(in
Organism
)
DatabaseReport
(in
Bio.Blast.Record
)
difference()
(in
Bio.listfns
)
draw()
(in
_ChromosomeComponent
)
DataHandler
(in
Bio.Entrez.Parser
)
DifferentialCutsite
(in
Bio.CAPS
)
draw()
(in
BarChartDistribution
)
DataRecord
(in
Bio.Enzyme
)
DifferentialSchemaFitness
(in
Bio.NeuralNetwork.Gene.Schema
)
draw()
(in
DistributionPage
)
date()
(in
_FeatureConsumer
)
DiffseqCommandline
(in
Bio.Emboss.Applications
)
draw()
(in
LineDistribution
)
date()
(in
_RecordConsumer
)
dindex_to_1
(in
Bio.PDB.Polypeptide
)
draw()
(in
CircularDrawer
)
date()
(in
_RecordConsumer
)
dindex_to_3
(in
Bio.PDB.Polypeptide
)
draw()
(in
Diagram
)
date()
(in
_RecordConsumer
)
direction2index
(in
Location
)
draw()
(in
LinearDrawer
)
date()
(in
_SequenceConsumer
)
direction_and_index()
(in
Location
)
draw_arrow()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
db_source()
(in
_FeatureConsumer
)
DirectoryRetriever
(in
Bio.PopGen.Async
)
draw_bar_graph()
(in
CircularDrawer
)
db_source()
(in
_RecordConsumer
)
disease()
(in
_RecordConsumer
)
draw_bar_graph()
(in
LinearDrawer
)
dblink()
(in
_FeatureConsumer
)
disordered_add()
(in
DisorderedAtom
)
draw_box()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
dblink()
(in
_RecordConsumer
)
disordered_add()
(in
DisorderedEntityWrapper
)
draw_feature()
(in
CircularDrawer
)
DBSeq
(in
BioSQL.BioSeq
)
disordered_add()
(in
DisorderedResidue
)
draw_feature()
(in
LinearDrawer
)
DBSeqRecord
(in
BioSQL.BioSeq
)
disordered_get()
(in
DisorderedEntityWrapper
)
draw_feature_location()
(in
LinearDrawer
)
DBServer
(in
BioSQL.BioSeqDatabase
)
disordered_get_id_list()
(in
DisorderedEntityWrapper
)
draw_feature_set()
(in
CircularDrawer
)
DBUtils
(in
BioSQL
)
disordered_get_list()
(in
DisorderedEntityWrapper
)
draw_feature_set()
(in
LinearDrawer
)
dbxrefs
(in
DBSeqRecord
)
disordered_has_id()
(in
DisorderedEntityWrapper
)
draw_graph_set()
(in
CircularDrawer
)
default()
(in
GenericASTTraversal
)
disordered_select()
(in
DisorderedEntityWrapper
)
draw_graph_set()
(in
LinearDrawer
)
DEFAULT_ALPHABET
(in
Bio.GFF
)
DisorderedAtom
(in
Bio.PDB.Atom
)
draw_greytrack()
(in
CircularDrawer
)
DEFAULT_BOUNDARY_CHARS
(in
Bio.triefind
)
DisorderedEntityWrapper
(in
Bio.PDB.Entity
)
draw_greytrack()
(in
LinearDrawer
)
default_manager
(in
Bio.PropertyManager
)
DisorderedResidue
(in
Bio.PDB.Residue
)
draw_heat_graph()
(in
CircularDrawer
)
DEFAULT_PSEUDO
(in
MarkovModelBuilder
)
display()
(in
Tree
)
draw_heat_graph()
(in
LinearDrawer
)
DEFAULT_VERSION
(in
ClustalAlignment
)
DisplayRepresentation
(in
Bio.Graphics
)
draw_line_graph()
(in
CircularDrawer
)
defaultdict
(in
Bio.SCOP.FileIndex
)
dist_dpq()
(in
Motif
)
draw_line_graph()
(in
LinearDrawer
)
DEFAULTNEXUS
(in
Bio.Nexus.Nexus
)
dist_dpq_at()
(in
Motif
)
draw_polygon()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
Defined
(in
Bio.Restriction.Restriction
)
dist_pearson()
(in
Motif
)
draw_scale()
(in
CircularDrawer
)
defined()
(in
Analysis
)
dist_pearson_at()
(in
Motif
)
draw_scale()
(in
LinearDrawer
)
definition()
(in
_FeatureConsumer
)
dist_product()
(in
Motif
)
draw_test_tracks()
(in
CircularDrawer
)
definition()
(in
_RecordConsumer
)
dist_product_at()
(in
Motif
)
draw_test_tracks()
(in
LinearDrawer
)
deg2rad
(in
Bio.Affy.CelFile
)
distance
(in
Bio
)
draw_tick()
(in
CircularDrawer
)
deg2rad
(in
Bio.distance
)
distance()
(in
Tree
)
draw_tick()
(in
LinearDrawer
)
degrees
(in
Bio.Affy.CelFile
)
distancematrix()
(in
Record
)
draw_to_file()
(in
ComparativeScatterPlot
)
degrees
(in
Bio.distance
)
Distribution
(in
Bio.Graphics
)
draw_track()
(in
CircularDrawer
)
del_feature()
(in
FeatureSet
)
DistributionPage
(in
Bio.Graphics.Distribution
)
draw_track()
(in
LinearDrawer
)
del_graph()
(in
GraphSet
)
Diversity
(in
Bio.GA.Selection
)
dropoff_1st_pass()
(in
_ParametersConsumer
)
del_set()
(in
Track
)
DiversitySelection
(in
Bio.GA.Selection.Diversity
)
ds
(in
Bio.Sequencing.Ace
)
del_track()
(in
Diagram
)
divide
(in
Bio.Affy.CelFile
)
DSSP
(in
Bio.PDB.DSSP'
)
Des
(in
Bio.SCOP
)
divide
(in
Bio.distance
)
DSSP'
(in
Bio.PDB
)
Description
(in
Bio.Blast.Record
)
DIWV
(in
Bio.SeqUtils.ProtParamData
)
dssp_dict_from_pdb_file()
(in
Bio.PDB.DSSP'
)
description()
(in
_DescriptionConsumer
)
DNA
(in
Bio.Restriction.Restriction
)
dumb_consensus()
(in
SummaryInfo
)
description()
(in
_RecordConsumer
)
DNA
(in
Bio.Restriction._Update.RestrictionCompiler
)
dump()
(in
Query
)
description()
(in
_RecordConsumer
)
dna_alphabet
(in
Bio.Restriction._Update.RestrictionCompiler
)
dump_saved()
(in
Bio.FilteredReader
)
description()
(in
_RecordConsumer
)
DNA_MATRIX
(in
MultipleAlignCL
)
dupe()
(in
Bio.PopGen.SimCoal.Template
)
description()
(in
_SequenceConsumer
)
DNAAlphabet
(in
Bio.Alphabet
)
DynamicProgramming
(in
Bio.HMM
)
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