Everything
All Classes
Bio.Affy.CelFile.CelConsumer
Bio.Affy.CelFile.CelParser
Bio.Affy.CelFile.CelRecord
Bio.Affy.CelFile.CelScanner
Bio.Affy.CelFile.Record
Bio.Align.AlignInfo.PSSM
Bio.Align.AlignInfo.SummaryInfo
Bio.Align.FormatConvert.FormatConverter
Bio.Align.Generic.Alignment
Bio.AlignAce.Applications.AlignAceCommandline
Bio.AlignAce.Applications.CompareAceCommandline
Bio.AlignAce.Motif.Motif
Bio.AlignAce.Parser.AlignAceConsumer
Bio.AlignAce.Parser.AlignAceParser
Bio.AlignAce.Parser.CompareAceConsumer
Bio.AlignAce.Parser.CompareAceParser
Bio.AlignAce.Scanner.AlignAceScanner
Bio.AlignAce.Scanner.CompareAceScanner
Bio.AlignIO.ClustalIO.ClustalIterator
Bio.AlignIO.ClustalIO.ClustalWriter
Bio.AlignIO.EmbossIO.EmbossIterator
Bio.AlignIO.EmbossIO.EmbossWriter
Bio.AlignIO.FastaIO.FastaM10Iterator
Bio.AlignIO.Interfaces.AlignmentIterator
Bio.AlignIO.Interfaces.AlignmentWriter
Bio.AlignIO.Interfaces.SequentialAlignmentWriter
Bio.AlignIO.NexusIO.NexusWriter
Bio.AlignIO.PhylipIO.PhylipIterator
Bio.AlignIO.PhylipIO.PhylipWriter
Bio.AlignIO.StockholmIO.StockholmIterator
Bio.AlignIO.StockholmIO.StockholmWriter
Bio.Alphabet.Alphabet
Bio.Alphabet.AlphabetEncoder
Bio.Alphabet.DNAAlphabet
Bio.Alphabet.Gapped
Bio.Alphabet.HasStopCodon
Bio.Alphabet.IUPAC.ExtendedIUPACDNA
Bio.Alphabet.IUPAC.ExtendedIUPACProtein
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA
Bio.Alphabet.IUPAC.IUPACProtein
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA
Bio.Alphabet.NucleotideAlphabet
Bio.Alphabet.ProteinAlphabet
Bio.Alphabet.RNAAlphabet
Bio.Alphabet.Reduced.HPModel
Bio.Alphabet.Reduced.Murphy10
Bio.Alphabet.Reduced.Murphy15
Bio.Alphabet.Reduced.Murphy4
Bio.Alphabet.Reduced.Murphy8
Bio.Alphabet.Reduced.PC5
Bio.Alphabet.SecondaryStructure
Bio.Alphabet.SingleLetterAlphabet
Bio.Alphabet.ThreeLetterProtein
Bio.Application.AbstractCommandline
Bio.Application.ApplicationResult
Bio.Blast.Applications.BlastallCommandline
Bio.Blast.Applications.BlastpgpCommandline
Bio.Blast.Applications.FastacmdCommandline
Bio.Blast.Applications.RpsBlastCommandline
Bio.Blast.NCBIStandalone.BlastErrorParser
Bio.Blast.NCBIStandalone.BlastParser
Bio.Blast.NCBIStandalone.Iterator
Bio.Blast.NCBIStandalone.LowQualityBlastError
Bio.Blast.NCBIStandalone.PSIBlastParser
Bio.Blast.NCBIStandalone.ShortQueryBlastError
Bio.Blast.NCBIXML.BlastParser
Bio.Blast.ParseBlastTable.BlastTableEntry
Bio.Blast.ParseBlastTable.BlastTableReader
Bio.Blast.ParseBlastTable.BlastTableRec
Bio.Blast.Record.Alignment
Bio.Blast.Record.Blast
Bio.Blast.Record.DatabaseReport
Bio.Blast.Record.Description
Bio.Blast.Record.HSP
Bio.Blast.Record.Header
Bio.Blast.Record.MultipleAlignment
Bio.Blast.Record.PSIBlast
Bio.Blast.Record.Parameters
Bio.Blast.Record.Round
Bio.CAPS.AlignmentHasDifferentLengthsError
Bio.CAPS.CAPSMap
Bio.CAPS.DifferentialCutsite
Bio.Clustalw.ClustalAlignment
Bio.Clustalw.MultipleAlignCL
Bio.Cluster.Record
Bio.Compass.Iterator
Bio.Compass.Record
Bio.Compass.RecordParser
Bio.Crystal.Chain
Bio.Crystal.Crystal
Bio.Crystal.CrystalError
Bio.Crystal.Hetero
Bio.Data.CodonTable.AmbiguousCodonTable
Bio.Data.CodonTable.AmbiguousForwardTable
Bio.Data.CodonTable.CodonTable
Bio.Data.CodonTable.NCBICodonTable
Bio.Data.CodonTable.NCBICodonTableDNA
Bio.Data.CodonTable.NCBICodonTableRNA
Bio.Data.CodonTable.TranslationError
Bio.DocSQL.Create
Bio.DocSQL.Insert
Bio.DocSQL.IterationCursor
Bio.DocSQL.NoInsertionError
Bio.DocSQL.Query
Bio.DocSQL.QueryAll
Bio.DocSQL.QueryAllFirstItem
Bio.DocSQL.QueryGeneric
Bio.DocSQL.QueryRow
Bio.DocSQL.QuerySingle
Bio.DocSQL.Update
Bio.Emboss.Applications.DiffseqCommandline
Bio.Emboss.Applications.EConsenseCommandline
Bio.Emboss.Applications.EInvertedCommandline
Bio.Emboss.Applications.ENeighborCommandline
Bio.Emboss.Applications.EProtDistCommandline
Bio.Emboss.Applications.EProtParsCommandline
Bio.Emboss.Applications.ESeqBootCommandline
Bio.Emboss.Applications.ETandemCommandline
Bio.Emboss.Applications.Est2GenomeCommandline
Bio.Emboss.Applications.FConsenseCommandline
Bio.Emboss.Applications.FDNADistCommandline
Bio.Emboss.Applications.FDNAParsCommandline
Bio.Emboss.Applications.FNeighborCommandline
Bio.Emboss.Applications.FProtDistCommandline
Bio.Emboss.Applications.FProtParsCommandline
Bio.Emboss.Applications.FSeqBootCommandline
Bio.Emboss.Applications.FTreeDistCommandline
Bio.Emboss.Applications.FuzznucCommandline
Bio.Emboss.Applications.IepCommandline
Bio.Emboss.Applications.NeedleCommandline
Bio.Emboss.Applications.PalindromeCommandline
Bio.Emboss.Applications.Primer3Commandline
Bio.Emboss.Applications.PrimerSearchCommandline
Bio.Emboss.Applications.SeqretCommandline
Bio.Emboss.Applications.TranalignCommandline
Bio.Emboss.Applications.WaterCommandline
Bio.Emboss.Primer3.Primers
Bio.Emboss.Primer3.Record
Bio.Emboss.PrimerSearch.Amplifier
Bio.Emboss.PrimerSearch.InputRecord
Bio.Emboss.PrimerSearch.OutputRecord
Bio.Entrez.Parser.DataHandler
Bio.Entrez.Parser.DictionaryElement
Bio.Entrez.Parser.IntegerElement
Bio.Entrez.Parser.ListElement
Bio.Entrez.Parser.StringElement
Bio.Entrez.Parser.StructureElement
Bio.Entrez.Parser.UnicodeElement
Bio.Enzyme.DataRecord
Bio.Enzyme.EnzymeRecord
Bio.Enzyme.Iterator
Bio.Enzyme.RecordParser
Bio.ExPASy.Enzyme.Record
Bio.ExPASy.Prodoc.Record
Bio.ExPASy.Prodoc.Reference
Bio.ExPASy.Prosite.Record
Bio.ExPASy.ScanProsite.ContentHandler
Bio.ExPASy.ScanProsite.Parser
Bio.ExPASy.ScanProsite.Record
Bio.FSSP.FSSPAlignDict
Bio.FSSP.FSSPAlignRec
Bio.FSSP.FSSPHeader
Bio.FSSP.FSSPSumDict
Bio.FSSP.FSSPSumRec
Bio.FSSP.FSSPTools.FSSPAlign
Bio.FSSP.FSSPTools.FSSPMultAlign
Bio.FSSP.PosAlign
Bio.FSSP.fssp_rec.align
Bio.FSSP.fssp_rec.fff_rec
Bio.Fasta.FastaAlign.FastaAlignment
Bio.Fasta.Iterator
Bio.Fasta.Record
Bio.Fasta.RecordParser
Bio.Fasta.SequenceParser
Bio.File.SGMLHandle
Bio.File.SGMLStripper
Bio.File.SGMLStripper.MyParser
Bio.File.UndoHandle
Bio.FilteredReader.FilteredReader
Bio.GA.Crossover.General.SafeFitnessCrossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover
Bio.GA.Crossover.GeneralPoint.TwoCrossover
Bio.GA.Crossover.Point.SinglePointCrossover
Bio.GA.Crossover.TwoPoint.TwoPointCrossover
Bio.GA.Crossover.Uniform.UniformCrossover
Bio.GA.Evolver.GenerationEvolver
Bio.GA.Evolver.SteadyStateEvolver
Bio.GA.Mutation.General.SafeFitnessMutation
Bio.GA.Mutation.Simple.ConversionMutation
Bio.GA.Mutation.Simple.SinglePositionMutation
Bio.GA.Organism.Organism
Bio.GA.Repair.Stabilizing.AmbiguousRepair
Bio.GA.Selection.Abstract.AbstractSelection
Bio.GA.Selection.Diversity.DiversitySelection
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection
Bio.GA.Selection.Tournament.TournamentSelection
Bio.GFF.Connection
Bio.GFF.Feature
Bio.GFF.FeatureAggregate
Bio.GFF.FeatureQuery
Bio.GFF.FeatureQueryRow
Bio.GFF.GenericTools.AppendableListDictionary
Bio.GFF.GenericTools.ArgsParser
Bio.GFF.GenericTools.ForgivingDictionary
Bio.GFF.GenericTools.Surrogate
Bio.GFF.GenericTools.SurrogateNotInitedError
Bio.GFF.GenericTools.TempFile
Bio.GFF.GenericTools.VerboseDict
Bio.GFF.GenericTools.VerboseList
Bio.GFF.RetrieveSeqname
Bio.GFF.Segment
Bio.GFF.binning.Meta
Bio.GFF.easy.FeatureDict
Bio.GFF.easy.Location
Bio.GFF.easy.LocationFromCoords
Bio.GFF.easy.LocationFromString
Bio.GFF.easy.LocationJoin
Bio.GenBank.FeatureParser
Bio.GenBank.Iterator
Bio.GenBank.LocationParser.AbsoluteLocation
Bio.GenBank.LocationParser.Between
Bio.GenBank.LocationParser.FeatureName
Bio.GenBank.LocationParser.Function
Bio.GenBank.LocationParser.HighBound
Bio.GenBank.LocationParser.Integer
Bio.GenBank.LocationParser.LocationParser
Bio.GenBank.LocationParser.LocationScanner
Bio.GenBank.LocationParser.LowBound
Bio.GenBank.LocationParser.Path
Bio.GenBank.LocationParser.Range
Bio.GenBank.LocationParser.Symbol
Bio.GenBank.LocationParser.Token
Bio.GenBank.LocationParser.TwoBound
Bio.GenBank.LocationParser.UnsignedInteger
Bio.GenBank.LocationParserError
Bio.GenBank.NCBIDictionary
Bio.GenBank.ParserFailureError
Bio.GenBank.Record.Feature
Bio.GenBank.Record.Qualifier
Bio.GenBank.Record.Record
Bio.GenBank.Record.Reference
Bio.GenBank.RecordParser
Bio.GenBank.Scanner.EmblScanner
Bio.GenBank.Scanner.GenBankScanner
Bio.GenBank.Scanner.InsdcScanner
Bio.GenBank.utils.FeatureValueCleaner
Bio.Geo.Record.Record
Bio.Graphics.BasicChromosome.Chromosome
Bio.Graphics.BasicChromosome.ChromosomeSegment
Bio.Graphics.BasicChromosome.Organism
Bio.Graphics.BasicChromosome.TelomereSegment
Bio.Graphics.Comparative.ComparativeScatterPlot
Bio.Graphics.DisplayRepresentation.ChromosomeCounts
Bio.Graphics.Distribution.BarChartDistribution
Bio.Graphics.Distribution.DistributionPage
Bio.Graphics.Distribution.LineDistribution
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms
Bio.HMM.DynamicProgramming.LogDPAlgorithms
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms
Bio.HMM.MarkovModel.HiddenMarkovModel
Bio.HMM.MarkovModel.MarkovModelBuilder
Bio.HMM.Trainer.AbstractTrainer
Bio.HMM.Trainer.BaumWelchTrainer
Bio.HMM.Trainer.KnownStateTrainer
Bio.HMM.Trainer.TrainingSequence
Bio.HotRand.HotCache
Bio.HotRand.HotRandom
Bio.InterPro.InterProParser
Bio.InterPro.Record
Bio.KDTree.KDTree.KDTree
Bio.KEGG.Compound.Record
Bio.KEGG.Enzyme.Record
Bio.LogisticRegression.LogisticRegression
Bio.MEME.Motif.Instance
Bio.MEME.Motif.MEMEMotif
Bio.MEME.Motif.Motif
Bio.MEME.Parser.MASTParser
Bio.MEME.Parser.MASTRecord
Bio.MEME.Parser.MEMEParser
Bio.MEME.Parser.MEMERecord
Bio.MarkovModel.MarkovModel
Bio.MaxEntropy.MaxEntropy
Bio.Medline.Record
Bio.MissingExternalDependencyError
Bio.Motif.Parsers.AlignAce.AlignAceConsumer
Bio.Motif.Parsers.AlignAce.AlignAceParser
Bio.Motif.Parsers.AlignAce.AlignAceScanner
Bio.Motif.Parsers.AlignAce.CompareAceConsumer
Bio.Motif.Parsers.AlignAce.CompareAceParser
Bio.Motif.Parsers.AlignAce.CompareAceScanner
Bio.Motif.Parsers.MEME.MASTParser
Bio.Motif.Parsers.MEME.MASTRecord
Bio.Motif.Parsers.MEME.MEMEInstance
Bio.Motif.Parsers.MEME.MEMEMotif
Bio.Motif.Parsers.MEME.MEMEParser
Bio.Motif.Parsers.MEME.MEMERecord
Bio.Motif.Thresholds.ScoreDistribution
Bio.NMR.xpktools.Peaklist
Bio.NMR.xpktools.XpkEntry
Bio.NaiveBayes.NaiveBayes
Bio.Ndb.NdbParser
Bio.Ndb.Record
Bio.NetCatch.ExtractUrls
Bio.NetCatch.NetCatch
Bio.NetCatch.Url
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork
Bio.NeuralNetwork.Gene.Motif.MotifCoder
Bio.NeuralNetwork.Gene.Motif.MotifFinder
Bio.NeuralNetwork.Gene.Pattern.PatternIO
Bio.NeuralNetwork.Gene.Pattern.PatternRepository
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator
Bio.NeuralNetwork.Gene.Schema.Schema
Bio.NeuralNetwork.Gene.Schema.SchemaCoder
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet
Bio.NeuralNetwork.Gene.Schema.SchemaFactory
Bio.NeuralNetwork.Gene.Schema.SchemaFinder
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher
Bio.NeuralNetwork.Gene.Signature.SignatureCoder
Bio.NeuralNetwork.Gene.Signature.SignatureFinder
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop
Bio.NeuralNetwork.Training.ExampleManager
Bio.NeuralNetwork.Training.TrainingExample
Bio.Nexus.Nexus.Block
Bio.Nexus.Nexus.CharBuffer
Bio.Nexus.Nexus.Commandline
Bio.Nexus.Nexus.Nexus
Bio.Nexus.Nexus.NexusError
Bio.Nexus.Nexus.StepMatrix
Bio.Nexus.Nodes.Chain
Bio.Nexus.Nodes.ChainException
Bio.Nexus.Nodes.Node
Bio.Nexus.Nodes.NodeException
Bio.Nexus.Trees.NodeData
Bio.Nexus.Trees.Tree
Bio.Nexus.Trees.TreeError
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap
Bio.PDB.Atom.Atom
Bio.PDB.Atom.DisorderedAtom
Bio.PDB.Chain.Chain
Bio.PDB.DSSP'.DSSP
Bio.PDB.Dice.ChainSelector
Bio.PDB.Entity.DisorderedEntityWrapper
Bio.PDB.Entity.Entity
Bio.PDB.FragmentMapper'.Fragment
Bio.PDB.FragmentMapper'.FragmentMapper
Bio.PDB.HSExposure.ExposureCN
Bio.PDB.HSExposure.HSExposureCA
Bio.PDB.HSExposure.HSExposureCB
Bio.PDB.MMCIF2Dict.MMCIF2Dict
Bio.PDB.MMCIFParser.MMCIFParser
Bio.PDB.Model.Model
Bio.PDB.NACCESS.NACCESS
Bio.PDB.NACCESS.NACCESS_atomic
Bio.PDB.NeighborSearch.NeighborSearch
Bio.PDB.PDBExceptions.PDBConstructionException
Bio.PDB.PDBExceptions.PDBConstructionWarning
Bio.PDB.PDBExceptions.PDBException
Bio.PDB.PDBIO'.PDBIO
Bio.PDB.PDBIO'.Select
Bio.PDB.PDBList'.PDBList
Bio.PDB.PDBParser'.PDBParser
Bio.PDB.PSEA.PSEA
Bio.PDB.Polypeptide.CaPPBuilder
Bio.PDB.Polypeptide.PPBuilder
Bio.PDB.Polypeptide.Polypeptide
Bio.PDB.Residue.DisorderedResidue
Bio.PDB.Residue.Residue
Bio.PDB.ResidueDepth'.ResidueDepth
Bio.PDB.Structure.Structure
Bio.PDB.StructureAlignment'.StructureAlignment
Bio.PDB.StructureBuilder.StructureBuilder
Bio.PDB.Superimposer'.Superimposer
Bio.PDB.Vector'.Vector
Bio.ParserSupport.AbstractConsumer
Bio.ParserSupport.AbstractParser
Bio.ParserSupport.EventGenerator
Bio.ParserSupport.SGMLStrippingConsumer
Bio.ParserSupport.TaggingConsumer
Bio.Parsers.spark.GenericASTBuilder
Bio.Parsers.spark.GenericASTMatcher
Bio.Parsers.spark.GenericASTTraversal
Bio.Parsers.spark.GenericASTTraversalPruningException
Bio.Parsers.spark.GenericParser
Bio.Parsers.spark.GenericScanner
Bio.Pathway.Interaction
Bio.Pathway.Network
Bio.Pathway.Reaction
Bio.Pathway.Rep.Graph.Graph
Bio.Pathway.Rep.HashSet.HashSet
Bio.Pathway.Rep.MultiGraph.MultiGraph
Bio.Pathway.System
Bio.PopGen.Async.Async
Bio.PopGen.Async.DirectoryRetriever
Bio.PopGen.Async.FileRetriever
Bio.PopGen.Async.Local.Local
Bio.PopGen.FDist.Async.FDistAsync
Bio.PopGen.FDist.Async.SplitFDist
Bio.PopGen.FDist.Controller.FDistController
Bio.PopGen.FDist.Record
Bio.PopGen.FDist.RecordParser
Bio.PopGen.GenePop.Controller.GenePopController
Bio.PopGen.GenePop.EasyController.EasyController
Bio.PopGen.GenePop.Record
Bio.PopGen.GenePop.RecordParser
Bio.PopGen.SimCoal.Async.SimCoalCache
Bio.PopGen.SimCoal.Cache.SimCoalCache
Bio.PopGen.SimCoal.Controller.SimCoalController
Bio.PropertyManager.CreateDict
Bio.PropertyManager.PropertyManager
Bio.Prosite.Dictionary
Bio.Prosite.Pattern.Prosite
Bio.Prosite.Pattern.PrositeAlphabet
Bio.Prosite.Pattern.PrositeMatch
Bio.Prosite.Pattern.PrositeTerm
Bio.Prosite.PatternHit
Bio.Prosite.Prodoc.Dictionary
Bio.Prosite.Prodoc.Record
Bio.Prosite.Prodoc.RecordParser
Bio.Prosite.Prodoc.Reference
Bio.Prosite.Record
Bio.Prosite.RecordParser
Bio.PubMed.Dictionary
Bio.Restriction.PrintFormat.PrintFormat
Bio.Restriction.Restriction.AbstractCut
Bio.Restriction.Restriction.Ambiguous
Bio.Restriction.Restriction.Analysis
Bio.Restriction.Restriction.Blunt
Bio.Restriction.Restriction.Commercially_available
Bio.Restriction.Restriction.Defined
Bio.Restriction.Restriction.FormattedSeq
Bio.Restriction.Restriction.Meth_Dep
Bio.Restriction.Restriction.Meth_Undep
Bio.Restriction.Restriction.NoCut
Bio.Restriction.Restriction.NonPalindromic
Bio.Restriction.Restriction.NotDefined
Bio.Restriction.Restriction.Not_available
Bio.Restriction.Restriction.OneCut
Bio.Restriction.Restriction.Ov3
Bio.Restriction.Restriction.Ov5
Bio.Restriction.Restriction.Palindromic
Bio.Restriction.Restriction.RestrictionBatch
Bio.Restriction.Restriction.RestrictionType
Bio.Restriction.Restriction.TwoCuts
Bio.Restriction.Restriction.Unknown
Bio.SCOP.Astral
Bio.SCOP.Cla.Index
Bio.SCOP.Cla.Record
Bio.SCOP.Des.Record
Bio.SCOP.Dom.Iterator
Bio.SCOP.Dom.Parser
Bio.SCOP.Dom.Record
Bio.SCOP.Domain
Bio.SCOP.FileIndex.FileIndex
Bio.SCOP.FileIndex.defaultdict
Bio.SCOP.Hie.Record
Bio.SCOP.Node
Bio.SCOP.Raf.Res
Bio.SCOP.Raf.SeqMap
Bio.SCOP.Raf.SeqMapIndex
Bio.SCOP.Residues'.Residues
Bio.SCOP.Scop
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer
Bio.Search.Algorithm
Bio.Search.Database
Bio.Search.HSP
Bio.Search.HSPSeq
Bio.Search.Hit
Bio.Search.HomologySeq
Bio.Search.Query
Bio.Search.Search
Bio.Search.TableInfo
Bio.Seq.MutableSeq
Bio.Seq.Seq
Bio.Seq.UnknownSeq
Bio.SeqFeature.AbstractPosition
Bio.SeqFeature.AfterPosition
Bio.SeqFeature.BeforePosition
Bio.SeqFeature.BetweenPosition
Bio.SeqFeature.ExactPosition
Bio.SeqFeature.FeatureLocation
Bio.SeqFeature.OneOfPosition
Bio.SeqFeature.PositionGap
Bio.SeqFeature.Reference
Bio.SeqFeature.SeqFeature
Bio.SeqFeature.WithinPosition
Bio.SeqIO.FastaIO.FastaWriter
Bio.SeqIO.InsdcIO.GenBankWriter
Bio.SeqIO.Interfaces.InterlacedSequenceIterator
Bio.SeqIO.Interfaces.SequenceIterator
Bio.SeqIO.Interfaces.SequenceWriter
Bio.SeqIO.Interfaces.SequentialSequenceWriter
Bio.SeqIO.PhdIO.PhdWriter
Bio.SeqIO.QualityIO.FastqIlluminaWriter
Bio.SeqIO.QualityIO.FastqPhredWriter
Bio.SeqIO.QualityIO.FastqSolexaWriter
Bio.SeqIO.QualityIO.QualPhredWriter
Bio.SeqIO.TabIO.TabWriter
Bio.SeqRecord.SeqRecord
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint
Bio.SeqUtils.MissingTable
Bio.SeqUtils.ProtParam.ProteinAnalysis
Bio.SeqUtils.ProteinX
Bio.Sequencing.Ace.ACEFileRecord
Bio.Sequencing.Ace.Contig
Bio.Sequencing.Ace.Reads
Bio.Sequencing.Ace.af
Bio.Sequencing.Ace.bs
Bio.Sequencing.Ace.ct
Bio.Sequencing.Ace.ds
Bio.Sequencing.Ace.qa
Bio.Sequencing.Ace.rd
Bio.Sequencing.Ace.rt
Bio.Sequencing.Ace.wa
Bio.Sequencing.Ace.wr
Bio.Sequencing.Phd.Record
Bio.SubsMat.AcceptedReplacementsMatrix
Bio.SubsMat.ExpectedFrequencyMatrix
Bio.SubsMat.FreqTable.FreqTable
Bio.SubsMat.LogOddsMatrix
Bio.SubsMat.ObservedFrequencyMatrix
Bio.SubsMat.SeqMat
Bio.SubsMat.SubstitutionMatrix
Bio.SwissProt.KeyWList.Record
Bio.SwissProt.Record
Bio.SwissProt.Reference
Bio.SwissProt.SProt.Dictionary
Bio.SwissProt.SProt.Record
Bio.SwissProt.SProt.RecordParser
Bio.SwissProt.SProt.Reference
Bio.SwissProt.SProt.SequenceParser
Bio.Transcribe.Transcribe
Bio.Translate.Translator
Bio.UniGene.Iterator
Bio.UniGene.ProtsimLine
Bio.UniGene.Record
Bio.UniGene.RecordParser
Bio.UniGene.STSLine
Bio.UniGene.SequenceLine
Bio.UniGene.UnigeneProtsimRecord
Bio.UniGene.UnigeneRecord
Bio.UniGene.UnigeneSTSRecord
Bio.UniGene.UnigeneSequenceRecord
Bio.WWW.RequestLimiter
Bio.Wise.dnal.Statistics
Bio.Wise.psw.Alignment
Bio.Wise.psw.AlignmentColumn
Bio.Wise.psw.AlignmentColumnFullException
Bio.Wise.psw.ColumnUnit
Bio.kNN.kNN
Bio.pairwise2.affine_penalty
Bio.pairwise2.dictionary_match
Bio.pairwise2.identity_match
BioSQL.BioSeq.DBSeq
BioSQL.BioSeq.DBSeqRecord
BioSQL.BioSeqDatabase.Adaptor
BioSQL.BioSeqDatabase.BioSeqDatabase
BioSQL.BioSeqDatabase.DBServer
BioSQL.DBUtils.Generic_dbutils
BioSQL.DBUtils.Mysql_dbutils
BioSQL.DBUtils.Pgdb_dbutils
BioSQL.DBUtils.Psycopg2_dbutils
BioSQL.DBUtils.Psycopg_dbutils
BioSQL.Loader.DatabaseLoader
BioSQL.Loader.DatabaseRemover
All Functions
Bio.Affy.CelFile.read
Bio.Align.AlignInfo.print_info_content
Bio.AlignAce.AlignAceStandalone.AlignAce
Bio.AlignAce.CompareAceStandalone.CompareAce
Bio.AlignIO.NexusIO.NexusIterator
Bio.AlignIO.convert
Bio.AlignIO.parse
Bio.AlignIO.read
Bio.AlignIO.write
Bio.Application.generic_run
Bio.Blast.NCBIStandalone.blastall
Bio.Blast.NCBIStandalone.blastpgp
Bio.Blast.NCBIStandalone.rpsblast
Bio.Blast.NCBIWWW.qblast
Bio.Blast.NCBIXML.parse
Bio.Blast.NCBIXML.read
Bio.Clustalw.do_alignment
Bio.Clustalw.parse_file
Bio.Cluster.read
Bio.Crystal.validate_key
Bio.Crystal.wrap_line
Bio.Data.CodonTable.list_ambiguous_codons
Bio.Data.CodonTable.list_possible_proteins
Bio.Data.CodonTable.make_back_table
Bio.Data.CodonTable.register_ncbi_table
Bio.EZRetrieve.parse_single
Bio.EZRetrieve.retrieve_single
Bio.Emboss.Primer3.read
Bio.Emboss.PrimerSearch.read
Bio.Entrez.efetch
Bio.Entrez.egquery
Bio.Entrez.einfo
Bio.Entrez.elink
Bio.Entrez.epost
Bio.Entrez.esearch
Bio.Entrez.espell
Bio.Entrez.esummary
Bio.Entrez.parse
Bio.Entrez.read
Bio.ExPASy.Enzyme.parse
Bio.ExPASy.Enzyme.read
Bio.ExPASy.Prodoc.parse
Bio.ExPASy.Prodoc.read
Bio.ExPASy.Prosite.parse
Bio.ExPASy.Prosite.read
Bio.ExPASy.ScanProsite.read
Bio.ExPASy.ScanProsite.scan
Bio.ExPASy.get_prodoc_entry
Bio.ExPASy.get_prosite_entry
Bio.ExPASy.get_prosite_raw
Bio.ExPASy.get_sprot_raw
Bio.ExPASy.scanprosite1
Bio.ExPASy.sprot_search_de
Bio.ExPASy.sprot_search_ful
Bio.FSSP.FSSPTools.filter
Bio.FSSP.FSSPTools.mult_align
Bio.FSSP.FSSPTools.name_filter
Bio.FSSP.read_fssp
Bio.Fasta.FastaAlign.parse_file
Bio.FilteredReader.dump_saved
Bio.FilteredReader.fix_punctuation
Bio.FilteredReader.has_trailing_linefeed
Bio.FilteredReader.remove_empty_line
Bio.FilteredReader.remove_leading_whitespace
Bio.FilteredReader.remove_useless_dot
Bio.GA.Organism.function_population
Bio.GA.Organism.random_population
Bio.GFF.object2fgroup_sql
Bio.GFF.object_split
Bio.GenBank.LocationParser.parse
Bio.GenBank.LocationParser.scan
Bio.Geo.Record.out_block
Bio.Geo.parse
Bio.HMM.Utilities.pretty_print_prediction
Bio.HotRand.byte_concat
Bio.HotRand.hex_convert
Bio.InterPro.get_interpro_entry
Bio.InterPro.pairlist_to_dict
Bio.KEGG.Compound.id_wrap
Bio.KEGG.Compound.parse
Bio.KEGG.Compound.struct_wrap
Bio.KEGG.Enzyme.id_wrap
Bio.KEGG.Enzyme.parse
Bio.KEGG.Enzyme.struct_wrap
Bio.KEGG.Map.parse
Bio.LogisticRegression.calculate
Bio.LogisticRegression.classify
Bio.LogisticRegression.train
Bio.MarkovModel.find_states
Bio.MarkovModel.itemindex
Bio.MarkovModel.load
Bio.MarkovModel.save
Bio.MarkovModel.train_bw
Bio.MarkovModel.train_visible
Bio.MaxEntropy.calculate
Bio.MaxEntropy.classify
Bio.MaxEntropy.train
Bio.Medline.parse
Bio.Medline.read
Bio.Motif.parse
Bio.Motif.read
Bio.NMR.NOEtools.predictNOE
Bio.NMR.xpktools.data_table
Bio.NMR.xpktools.replace_entry
Bio.NaiveBayes.calculate
Bio.NaiveBayes.classify
Bio.NaiveBayes.train
Bio.NetCatch.is_absolute_url
Bio.NeuralNetwork.BackPropagation.Layer.logistic_function
Bio.NeuralNetwork.Gene.Schema.matches_schema
Bio.Nexus.Nexus.combine
Bio.Nexus.Nexus.get_start_end
Bio.Nexus.Nexus.quotestrip
Bio.Nexus.Nexus.safename
Bio.Nexus.Trees.consensus
Bio.PDB.DSSP'.dssp_dict_from_pdb_file
Bio.PDB.DSSP'.make_dssp_dict
Bio.PDB.DSSP'.ss_to_index
Bio.PDB.Dice.extract
Bio.PDB.NACCESS.process_asa_data
Bio.PDB.NACCESS.process_rsa_data
Bio.PDB.NACCESS.run_naccess
Bio.PDB.PSEA.annotate
Bio.PDB.PSEA.psea
Bio.PDB.PSEA.psea2HEC
Bio.PDB.PSEA.run_psea
Bio.PDB.Polypeptide.index_to_one
Bio.PDB.Polypeptide.index_to_three
Bio.PDB.Polypeptide.is_aa
Bio.PDB.Polypeptide.one_to_index
Bio.PDB.Polypeptide.one_to_three
Bio.PDB.Polypeptide.three_to_index
Bio.PDB.Polypeptide.three_to_one
Bio.PDB.ResidueDepth'.ca_depth
Bio.PDB.ResidueDepth'.get_surface
Bio.PDB.ResidueDepth'.min_dist
Bio.PDB.ResidueDepth'.residue_depth
Bio.PDB.Selection.get_unique_parents
Bio.PDB.Selection.unfold_entities
Bio.PDB.Selection.uniqueify
Bio.PDB.Vector'.calc_angle
Bio.PDB.Vector'.calc_dihedral
Bio.PDB.Vector'.m2rotaxis
Bio.PDB.Vector'.refmat
Bio.PDB.Vector'.rotaxis
Bio.PDB.Vector'.rotmat
Bio.PDB.Vector'.vector_to_axis
Bio.PDB.parse_pdb_header'.parse_pdb_header
Bio.ParserSupport.attempt_read_and_call
Bio.ParserSupport.is_blank_line
Bio.ParserSupport.read_and_call
Bio.ParserSupport.read_and_call_until
Bio.ParserSupport.read_and_call_while
Bio.ParserSupport.safe_peekline
Bio.ParserSupport.safe_readline
Bio.Pathway.Rep.MultiGraph.bf_search
Bio.Pathway.Rep.MultiGraph.df_search
Bio.PopGen.FDist.Utils.approximate_fst
Bio.PopGen.FDist.Utils.convert_genepop_to_fdist
Bio.PopGen.GenePop.parse
Bio.PopGen.SimCoal.Template.dupe
Bio.PopGen.SimCoal.Template.exec_template
Bio.PopGen.SimCoal.Template.generate_island_mat
Bio.PopGen.SimCoal.Template.generate_join_events
Bio.PopGen.SimCoal.Template.generate_model
Bio.PopGen.SimCoal.Template.generate_null_mat
Bio.PopGen.SimCoal.Template.generate_simcoal_from_template
Bio.PopGen.SimCoal.Template.generate_ssm2d_mat
Bio.PopGen.SimCoal.Template.get_chr_template
Bio.PopGen.SimCoal.Template.get_demography_template
Bio.PopGen.SimCoal.Template.get_step_2d
Bio.PopGen.SimCoal.Template.get_xy_from_matrix
Bio.PopGen.SimCoal.Template.no_processor
Bio.PopGen.SimCoal.Template.process_para
Bio.PopGen.SimCoal.Template.process_text
Bio.Prosite.Pattern.compile
Bio.Prosite.Pattern.find_terms
Bio.Prosite.Pattern.pattern_mapping
Bio.Prosite.Pattern.prosite_to_grouped_re
Bio.Prosite.Pattern.prosite_to_re
Bio.Prosite.Pattern.verify_pattern
Bio.Prosite.Prodoc.index_file
Bio.Prosite.Prodoc.parse
Bio.Prosite.Prodoc.read
Bio.Prosite.index_file
Bio.Prosite.parse
Bio.Prosite.read
Bio.Prosite.scan_sequence_expasy
Bio.PubMed.download_many
Bio.PubMed.find_related
Bio.PubMed.search_for
Bio.SCOP.Cla.parse
Bio.SCOP.Des.parse
Bio.SCOP.Dom.parse
Bio.SCOP.Hie.parse
Bio.SCOP.Raf.normalize_letters
Bio.SCOP.Raf.parse
Bio.SCOP.cmp_sccs
Bio.SCOP.parse_domain
Bio.SCOP.search
Bio.Seq.back_transcribe
Bio.Seq.reverse_complement
Bio.Seq.transcribe
Bio.Seq.translate
Bio.SeqIO.AceIO.AceIterator
Bio.SeqIO.FastaIO.FastaIterator
Bio.SeqIO.IgIO.IgIterator
Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator
Bio.SeqIO.InsdcIO.EmblIterator
Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator
Bio.SeqIO.InsdcIO.GenBankIterator
Bio.SeqIO.PhdIO.PhdIterator
Bio.SeqIO.PirIO.PirIterator
Bio.SeqIO.QualityIO.FastqGeneralIterator
Bio.SeqIO.QualityIO.FastqIlluminaIterator
Bio.SeqIO.QualityIO.FastqPhredIterator
Bio.SeqIO.QualityIO.FastqSolexaIterator
Bio.SeqIO.QualityIO.PairedFastaQualIterator
Bio.SeqIO.QualityIO.QualPhredIterator
Bio.SeqIO.QualityIO.phred_quality_from_solexa
Bio.SeqIO.QualityIO.solexa_quality_from_phred
Bio.SeqIO.SwissIO.SwissIterator
Bio.SeqIO.TabIO.TabIterator
Bio.SeqIO.convert
Bio.SeqIO.index
Bio.SeqIO.parse
Bio.SeqIO.read
Bio.SeqIO.to_alignment
Bio.SeqIO.to_dict
Bio.SeqIO.write
Bio.SeqUtils.CheckSum.crc32
Bio.SeqUtils.CheckSum.crc64
Bio.SeqUtils.CheckSum.gcg
Bio.SeqUtils.CheckSum.seguid
Bio.SeqUtils.GC
Bio.SeqUtils.GC123
Bio.SeqUtils.GC_Frame
Bio.SeqUtils.GC_skew
Bio.SeqUtils.MeltingTemp.Tm_staluc
Bio.SeqUtils.apply_on_multi_fasta
Bio.SeqUtils.fasta_uniqids
Bio.SeqUtils.lcc.lcc_mult
Bio.SeqUtils.lcc.lcc_simp
Bio.SeqUtils.makeTableX
Bio.SeqUtils.molecular_weight
Bio.SeqUtils.nt_search
Bio.SeqUtils.quick_FASTA_reader
Bio.SeqUtils.quicker_apply_on_multi_fasta
Bio.SeqUtils.reverse
Bio.SeqUtils.seq3
Bio.SeqUtils.six_frame_translations
Bio.SeqUtils.translate
Bio.SeqUtils.xGC_skew
Bio.Sequencing.Ace.parse
Bio.Sequencing.Ace.read
Bio.Sequencing.Phd.parse
Bio.Sequencing.Phd.read
Bio.Statistics.lowess.lowess
Bio.SubsMat.FreqTable.read_count
Bio.SubsMat.FreqTable.read_freq
Bio.SubsMat.make_log_odds_matrix
Bio.SubsMat.observed_frequency_to_substitution_matrix
Bio.SubsMat.read_text_matrix
Bio.SubsMat.two_mat_DJS
Bio.SubsMat.two_mat_correlation
Bio.SubsMat.two_mat_relative_entropy
Bio.SwissProt.KeyWList.parse
Bio.SwissProt.SProt.index_file
Bio.SwissProt.SProt.parse
Bio.SwissProt.SProt.read
Bio.SwissProt.parse
Bio.SwissProt.read
Bio.UniGene.parse
Bio.UniGene.read
Bio.Wise.align
Bio.Wise.all_pairs
Bio.Wise.dnal.align
Bio.Wise.dnal.main
Bio.Wise.main
Bio.Wise.psw.align
Bio.Wise.psw.main
Bio.Wise.psw.parse
Bio.Wise.psw.parse_line
Bio.distance.euclidean
Bio.distance.euclidean_py
Bio.kNN.calculate
Bio.kNN.classify
Bio.kNN.equal_weight
Bio.kNN.train
Bio.listfns.asdict
Bio.listfns.contents
Bio.listfns.count
Bio.listfns.difference
Bio.listfns.indexesof
Bio.listfns.intersection
Bio.listfns.itemindex
Bio.listfns.items
Bio.listfns.take
Bio.listfns.take_byfn
Bio.mathfns.fcmp
Bio.mathfns.intd
Bio.mathfns.safe_exp
Bio.mathfns.safe_log
Bio.mathfns.safe_log2
Bio.pairwise2.calc_affine_penalty
Bio.pairwise2.format_alignment
Bio.pairwise2.print_matrix
Bio.pairwise2.rint
Bio.stringfns.find_anychar
Bio.stringfns.rfind_anychar
Bio.stringfns.splitany
Bio.triefind.find
Bio.triefind.find_words
Bio.triefind.match
Bio.triefind.match_all
Bio.utils.back_transcribe
Bio.utils.back_translate
Bio.utils.count_monomers
Bio.utils.percent_monomers
Bio.utils.reduce_sequence
Bio.utils.sum
Bio.utils.sum_2ple
Bio.utils.total_weight
Bio.utils.total_weight_range
Bio.utils.transcribe
Bio.utils.translate
Bio.utils.translate_to_stop
Bio.utils.ungap
Bio.utils.verify_alphabet
BioSQL.BioSeqDatabase.open_database
BioSQL.DBUtils.get_dbutils
All Variables
Bio.Affy.CelFile.ALLOW_THREADS
Bio.Affy.CelFile.BUFSIZE
Bio.Affy.CelFile.CLIP
Bio.Affy.CelFile.ERR_CALL
Bio.Affy.CelFile.ERR_DEFAULT
Bio.Affy.CelFile.ERR_DEFAULT2
Bio.Affy.CelFile.ERR_IGNORE
Bio.Affy.CelFile.ERR_LOG
Bio.Affy.CelFile.ERR_PRINT
Bio.Affy.CelFile.ERR_RAISE
Bio.Affy.CelFile.ERR_WARN
Bio.Affy.CelFile.FLOATING_POINT_SUPPORT
Bio.Affy.CelFile.FPE_DIVIDEBYZERO
Bio.Affy.CelFile.FPE_INVALID
Bio.Affy.CelFile.FPE_OVERFLOW
Bio.Affy.CelFile.FPE_UNDERFLOW
Bio.Affy.CelFile.False_
Bio.Affy.CelFile.Inf
Bio.Affy.CelFile.Infinity
Bio.Affy.CelFile.MAXDIMS
Bio.Affy.CelFile.NAN
Bio.Affy.CelFile.NINF
Bio.Affy.CelFile.NZERO
Bio.Affy.CelFile.NaN
Bio.Affy.CelFile.PINF
Bio.Affy.CelFile.PZERO
Bio.Affy.CelFile.RAISE
Bio.Affy.CelFile.SHIFT_DIVIDEBYZERO
Bio.Affy.CelFile.SHIFT_INVALID
Bio.Affy.CelFile.SHIFT_OVERFLOW
Bio.Affy.CelFile.SHIFT_UNDERFLOW
Bio.Affy.CelFile.ScalarType
Bio.Affy.CelFile.True_
Bio.Affy.CelFile.UFUNC_BUFSIZE_DEFAULT
Bio.Affy.CelFile.UFUNC_PYVALS_NAME
Bio.Affy.CelFile.WRAP
Bio.Affy.CelFile.__package__
Bio.Affy.CelFile.absolute
Bio.Affy.CelFile.add
Bio.Affy.CelFile.arccos
Bio.Affy.CelFile.arccosh
Bio.Affy.CelFile.arcsin
Bio.Affy.CelFile.arcsinh
Bio.Affy.CelFile.arctan
Bio.Affy.CelFile.arctan2
Bio.Affy.CelFile.arctanh
Bio.Affy.CelFile.bitwise_and
Bio.Affy.CelFile.bitwise_not
Bio.Affy.CelFile.bitwise_or
Bio.Affy.CelFile.bitwise_xor
Bio.Affy.CelFile.c_
Bio.Affy.CelFile.cast
Bio.Affy.CelFile.ceil
Bio.Affy.CelFile.conj
Bio.Affy.CelFile.conjugate
Bio.Affy.CelFile.cos
Bio.Affy.CelFile.cosh
Bio.Affy.CelFile.deg2rad
Bio.Affy.CelFile.degrees
Bio.Affy.CelFile.divide
Bio.Affy.CelFile.e
Bio.Affy.CelFile.equal
Bio.Affy.CelFile.exp
Bio.Affy.CelFile.exp2
Bio.Affy.CelFile.expm1
Bio.Affy.CelFile.fabs
Bio.Affy.CelFile.floor
Bio.Affy.CelFile.floor_divide
Bio.Affy.CelFile.fmax
Bio.Affy.CelFile.fmin
Bio.Affy.CelFile.fmod
Bio.Affy.CelFile.frexp
Bio.Affy.CelFile.greater
Bio.Affy.CelFile.greater_equal
Bio.Affy.CelFile.hypot
Bio.Affy.CelFile.index_exp
Bio.Affy.CelFile.inf
Bio.Affy.CelFile.infty
Bio.Affy.CelFile.invert
Bio.Affy.CelFile.isfinite
Bio.Affy.CelFile.isinf
Bio.Affy.CelFile.isnan
Bio.Affy.CelFile.ldexp
Bio.Affy.CelFile.left_shift
Bio.Affy.CelFile.less
Bio.Affy.CelFile.less_equal
Bio.Affy.CelFile.little_endian
Bio.Affy.CelFile.log
Bio.Affy.CelFile.log10
Bio.Affy.CelFile.log1p
Bio.Affy.CelFile.logaddexp
Bio.Affy.CelFile.logaddexp2
Bio.Affy.CelFile.logical_and
Bio.Affy.CelFile.logical_not
Bio.Affy.CelFile.logical_or
Bio.Affy.CelFile.logical_xor
Bio.Affy.CelFile.maximum
Bio.Affy.CelFile.mgrid
Bio.Affy.CelFile.minimum
Bio.Affy.CelFile.mod
Bio.Affy.CelFile.modf
Bio.Affy.CelFile.multiply
Bio.Affy.CelFile.nan
Bio.Affy.CelFile.nbytes
Bio.Affy.CelFile.negative
Bio.Affy.CelFile.newaxis
Bio.Affy.CelFile.not_equal
Bio.Affy.CelFile.ogrid
Bio.Affy.CelFile.ones_like
Bio.Affy.CelFile.pi
Bio.Affy.CelFile.power
Bio.Affy.CelFile.r_
Bio.Affy.CelFile.rad2deg
Bio.Affy.CelFile.radians
Bio.Affy.CelFile.reciprocal
Bio.Affy.CelFile.remainder
Bio.Affy.CelFile.right_shift
Bio.Affy.CelFile.rint
Bio.Affy.CelFile.s_
Bio.Affy.CelFile.sctypeDict
Bio.Affy.CelFile.sctypeNA
Bio.Affy.CelFile.sctypes
Bio.Affy.CelFile.sign
Bio.Affy.CelFile.signbit
Bio.Affy.CelFile.sin
Bio.Affy.CelFile.sinh
Bio.Affy.CelFile.sqrt
Bio.Affy.CelFile.square
Bio.Affy.CelFile.subtract
Bio.Affy.CelFile.tan
Bio.Affy.CelFile.tanh
Bio.Affy.CelFile.true_divide
Bio.Affy.CelFile.trunc
Bio.Affy.CelFile.typeDict
Bio.Affy.CelFile.typeNA
Bio.Affy.CelFile.typecodes
Bio.Affy.__package__
Bio.Align.AlignInfo.Nucleotide4Random
Bio.Align.AlignInfo.Protein20Random
Bio.Align.AlignInfo.__package__
Bio.Align.Applications.__package__
Bio.Align.FormatConvert.__package__
Bio.Align.FormatConvert.__warningregistry__
Bio.Align.Generic.__package__
Bio.Align.__package__
Bio.AlignAce.AlignAceStandalone.__package__
Bio.AlignAce.Applications.__package__
Bio.AlignAce.CompareAceStandalone.__package__
Bio.AlignAce.Motif.__package__
Bio.AlignAce.Parser.StringTypes
Bio.AlignAce.Parser.__package__
Bio.AlignAce.Parser.xml_support
Bio.AlignAce.Scanner.__package__
Bio.AlignAce.__package__
Bio.AlignAce.__warningregistry__
Bio.AlignIO.ClustalIO.__package__
Bio.AlignIO.EmbossIO.__package__
Bio.AlignIO.FastaIO.__package__
Bio.AlignIO.Interfaces.__package__
Bio.AlignIO.NexusIO.__package__
Bio.AlignIO.PhylipIO.__package__
Bio.AlignIO.StockholmIO.__package__
Bio.AlignIO.__package__
Bio.Alphabet.IUPAC.__package__
Bio.Alphabet.IUPAC.ambiguous_dna
Bio.Alphabet.IUPAC.ambiguous_rna
Bio.Alphabet.IUPAC.extended_dna
Bio.Alphabet.IUPAC.extended_protein
Bio.Alphabet.IUPAC.protein
Bio.Alphabet.IUPAC.unambiguous_dna
Bio.Alphabet.IUPAC.unambiguous_rna
Bio.Alphabet.Reduced.__package__
Bio.Alphabet.Reduced.hp_model
Bio.Alphabet.Reduced.hp_model_tab
Bio.Alphabet.Reduced.murphy_10
Bio.Alphabet.Reduced.murphy_10_tab
Bio.Alphabet.Reduced.murphy_15
Bio.Alphabet.Reduced.murphy_15_tab
Bio.Alphabet.Reduced.murphy_4
Bio.Alphabet.Reduced.murphy_4_tab
Bio.Alphabet.Reduced.murphy_8
Bio.Alphabet.Reduced.murphy_8_tab
Bio.Alphabet.Reduced.pc_5_table
Bio.Alphabet.__package__
Bio.Alphabet.generic_alphabet
Bio.Alphabet.generic_dna
Bio.Alphabet.generic_nucleotide
Bio.Alphabet.generic_protein
Bio.Alphabet.generic_rna
Bio.Alphabet.single_letter_alphabet
Bio.Application.__package__
Bio.Blast.Applications.__package__
Bio.Blast.NCBIStandalone.StringTypes
Bio.Blast.NCBIStandalone.__package__
Bio.Blast.NCBIStandalone.xml_support
Bio.Blast.NCBIWWW.__package__
Bio.Blast.NCBIXML.__package__
Bio.Blast.ParseBlastTable.__package__
Bio.Blast.ParseBlastTable.reader_keywords
Bio.Blast.Record.__package__
Bio.Blast.__package__
Bio.CAPS.__package__
Bio.Clustalw.__package__
Bio.Compass.StringTypes
Bio.Compass.__package__
Bio.Compass.xml_support
Bio.Crystal.__package__
Bio.Data.CodonTable.__package__
Bio.Data.CodonTable.ambiguous_dna_by_id
Bio.Data.CodonTable.ambiguous_dna_by_name
Bio.Data.CodonTable.ambiguous_generic_by_id
Bio.Data.CodonTable.ambiguous_generic_by_name
Bio.Data.CodonTable.ambiguous_rna_by_id
Bio.Data.CodonTable.ambiguous_rna_by_name
Bio.Data.CodonTable.generic_by_id
Bio.Data.CodonTable.generic_by_name
Bio.Data.CodonTable.standard_dna_table
Bio.Data.CodonTable.standard_rna_table
Bio.Data.CodonTable.unambiguous_dna_by_id
Bio.Data.CodonTable.unambiguous_dna_by_name
Bio.Data.CodonTable.unambiguous_rna_by_id
Bio.Data.CodonTable.unambiguous_rna_by_name
Bio.Data.IUPACData.__package__
Bio.Data.IUPACData.ambiguous_dna_complement
Bio.Data.IUPACData.ambiguous_dna_letters
Bio.Data.IUPACData.ambiguous_dna_values
Bio.Data.IUPACData.ambiguous_dna_weight_ranges
Bio.Data.IUPACData.ambiguous_rna_complement
Bio.Data.IUPACData.ambiguous_rna_letters
Bio.Data.IUPACData.ambiguous_rna_values
Bio.Data.IUPACData.ambiguous_rna_weight_ranges
Bio.Data.IUPACData.avg_ambiguous_dna_weights
Bio.Data.IUPACData.avg_ambiguous_rna_weights
Bio.Data.IUPACData.avg_extended_protein_weights
Bio.Data.IUPACData.extended_dna_letters
Bio.Data.IUPACData.extended_protein_letters
Bio.Data.IUPACData.extended_protein_values
Bio.Data.IUPACData.extended_protein_weight_ranges
Bio.Data.IUPACData.protein_letters
Bio.Data.IUPACData.protein_weight_ranges
Bio.Data.IUPACData.protein_weights
Bio.Data.IUPACData.unambiguous_dna_letters
Bio.Data.IUPACData.unambiguous_dna_weight_ranges
Bio.Data.IUPACData.unambiguous_dna_weights
Bio.Data.IUPACData.unambiguous_rna_letters
Bio.Data.IUPACData.unambiguous_rna_weight_ranges
Bio.Data.IUPACData.unambiguous_rna_weights
Bio.Data.__package__
Bio.DocSQL.connection
Bio.EZRetrieve.__package__
Bio.EZRetrieve.__warningregistry__
Bio.Emboss.Applications.__package__
Bio.Emboss.Primer3.__package__
Bio.Emboss.PrimerSearch.__package__
Bio.Emboss.__package__
Bio.Encodings.IUPACEncoding.__package__
Bio.Encodings.IUPACEncoding.id
Bio.Encodings.IUPACEncoding.name
Bio.Encodings.IUPACEncoding.obj
Bio.Encodings.IUPACEncoding.property
Bio.Encodings.IUPACEncoding.set_prop
Bio.Encodings.__package__
Bio.Entrez.Parser.__package__
Bio.Entrez.__package__
Bio.Entrez.email
Bio.Enzyme.StringTypes
Bio.Enzyme.__package__
Bio.Enzyme.xml_support
Bio.ExPASy.Enzyme.__package__
Bio.ExPASy.Prodoc.__package__
Bio.ExPASy.Prosite.__package__
Bio.ExPASy.ScanProsite.__package__
Bio.ExPASy.__package__
Bio.FSSP.FSSPTools.__package__
Bio.FSSP.__package__
Bio.FSSP.alignments_rec
Bio.FSSP.alignments_title
Bio.FSSP.equiv_title
Bio.FSSP.fssp_rec.__package__
Bio.FSSP.header_records
Bio.FSSP.summary_rec
Bio.FSSP.summary_title
Bio.Fasta.FastaAlign.__package__
Bio.Fasta.__package__
Bio.Fasta.__warningregistry__
Bio.File.__package__
Bio.FilteredReader.__package__
Bio.FilteredReader.__warningregistry__
Bio.GA.Crossover.General.__package__
Bio.GA.Crossover.GeneralPoint.__package__
Bio.GA.Crossover.Point.__package__
Bio.GA.Crossover.TwoPoint.__package__
Bio.GA.Crossover.Uniform.__package__
Bio.GA.Crossover.__package__
Bio.GA.Evolver.__package__
Bio.GA.Mutation.General.__package__
Bio.GA.Mutation.Simple.__package__
Bio.GA.Mutation.__package__
Bio.GA.Organism.__package__
Bio.GA.Repair.Stabilizing.__package__
Bio.GA.Repair.__package__
Bio.GA.Selection.Abstract.__package__
Bio.GA.Selection.Diversity.__package__
Bio.GA.Selection.RouletteWheel.__package__
Bio.GA.Selection.Tournament.__package__
Bio.GA.Selection.__package__
Bio.GA.__package__
Bio.GFF.DEFAULT_ALPHABET
Bio.GFF.easy.re_complement
Bio.GFF.easy.re_dotdot
Bio.GFF.easy.re_fuzzy
Bio.GFF.easy.re_join
Bio.GFF.easy.re_seqname
Bio.GenBank.FEATURE_KEY_INDENT
Bio.GenBank.FEATURE_KEY_SPACER
Bio.GenBank.FEATURE_QUALIFIER_INDENT
Bio.GenBank.FEATURE_QUALIFIER_SPACER
Bio.GenBank.GENBANK_INDENT
Bio.GenBank.GENBANK_SPACER
Bio.GenBank.LocationParser.__package__
Bio.GenBank.Record.__package__
Bio.GenBank.Scanner.__package__
Bio.GenBank.__package__
Bio.GenBank.utils.__package__
Bio.Geo.Record.__package__
Bio.Geo.__package__
Bio.Graphics.BasicChromosome.__package__
Bio.Graphics.Comparative.__package__
Bio.Graphics.DisplayRepresentation.RAINBOW_COLORS
Bio.Graphics.DisplayRepresentation.__package__
Bio.Graphics.Distribution.__package__
Bio.Graphics.GenomeDiagram.__package__
Bio.Graphics.__package__
Bio.HMM.DynamicProgramming.__package__
Bio.HMM.MarkovModel.__package__
Bio.HMM.Trainer.__package__
Bio.HMM.Utilities.__package__
Bio.HMM.__package__
Bio.HotRand.__package__
Bio.HotRand.hot_random
Bio.HotRand.nums
Bio.Index.__package__
Bio.InterPro.__package__
Bio.KEGG.Compound.__package__
Bio.KEGG.Compound.name_wrap
Bio.KEGG.Enzyme.__package__
Bio.KEGG.Enzyme.name_wrap
Bio.KEGG.Enzyme.rxn_wrap
Bio.KEGG.KEGG_DATA_LENGTH
Bio.KEGG.KEGG_ITEM_LENGTH
Bio.KEGG.KEGG_LINE_LENGTH
Bio.KEGG.Map.__package__
Bio.KEGG.__package__
Bio.LogisticRegression.__package__
Bio.MEME.Motif.__package__
Bio.MEME.Parser.StringTypes
Bio.MEME.Parser.__package__
Bio.MEME.Parser.xml_support
Bio.MEME.__package__
Bio.MEME.__warningregistry__
Bio.MarkovModel.LOG0
Bio.MarkovModel.MAX_ITERATIONS
Bio.MarkovModel.VERY_SMALL_NUMBER
Bio.MarkovModel.__package__
Bio.MarkovModel.this_module
Bio.MarkovModel.x
Bio.MaxEntropy.IIS_CONVERGE
Bio.MaxEntropy.MAX_IIS_ITERATIONS
Bio.MaxEntropy.MAX_NEWTON_ITERATIONS
Bio.MaxEntropy.NEWTON_CONVERGE
Bio.MaxEntropy.__package__
Bio.Medline.__package__
Bio.Motif.Applications.__package__
Bio.Motif.Parsers.AlignAce.StringTypes
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