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Identifier Index
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_
]
G
GA
(in
Bio
)
get_amino_acids_percent()
(in
ProteinAnalysis
)
get_recent_changes()
(in
PDBList
)
gap_consensus()
(in
SummaryInfo
)
get_anisou()
(in
Atom
)
get_residue()
(in
PSSM
)
gap_penalties()
(in
_ParametersConsumer
)
get_array()
(in
Vector
)
get_residues()
(in
Model
)
gap_trigger()
(in
_ParametersConsumer
)
get_artemis_colorscheme()
(in
ColorTranslator
)
get_residues()
(in
Structure
)
gap_x_dropoff()
(in
_ParametersConsumer
)
get_atoms()
(in
Chain
)
get_resname()
(in
Residue
)
gap_x_dropoff_final()
(in
_ParametersConsumer
)
get_atoms()
(in
Model
)
get_resname_list()
(in
Fragment
)
gaponly()
(in
Nexus
)
get_atoms()
(in
Structure
)
get_result()
(in
ApplicationResult
)
Gapped
(in
Bio.Alphabet
)
get_avg_fis()
(in
EasyController
)
get_result()
(in
Async
)
gapped()
(in
_DatabaseReportConsumer
)
get_avg_fst_pair()
(in
EasyController
)
get_rms()
(in
SVDSuperimposer
)
GB_BASE_INDENT
(in
Record
)
get_avg_fst_pair_locus()
(in
EasyController
)
get_rotran()
(in
SVDSuperimposer
)
GB_FEATURE_INDENT
(in
Record
)
get_basic_info()
(in
EasyController
)
get_segid()
(in
Residue
)
GB_FEATURE_INTERNAL_INDENT
(in
Record
)
get_bfactor()
(in
Atom
)
get_segment_info()
(in
ChromosomeCounts
)
GB_INTERNAL_INDENT
(in
Record
)
get_blank_emissions()
(in
HiddenMarkovModel
)
get_seq()
(in
PSEA
)
GB_LINE_LENGTH
(in
Record
)
get_blank_transitions()
(in
HiddenMarkovModel
)
get_Seq_by_acc()
(in
BioSeqDatabase
)
GB_OTHER_INTERNAL_INDENT
(in
Record
)
get_ca_list()
(in
Polypeptide
)
get_Seq_by_id()
(in
BioSeqDatabase
)
GB_SEQUENCE_INDENT
(in
Record
)
get_chains()
(in
Structure
)
get_seq_by_num()
(in
Alignment
)
GC()
(in
Bio.SeqUtils
)
get_chr_template()
(in
Bio.PopGen.SimCoal.Template
)
get_Seq_by_primary_id()
(in
BioSeqDatabase
)
GC123()
(in
Bio.SeqUtils
)
get_colorscheme()
(in
ColorTranslator
)
get_Seq_by_ver()
(in
BioSeqDatabase
)
GC_Frame()
(in
Bio.SeqUtils
)
get_column()
(in
SummaryInfo
)
get_seqres_file()
(in
PDBList
)
GC_skew()
(in
Bio.SeqUtils
)
get_column()
(in
Alignment
)
get_Seqs_by_acc()
(in
BioSeqDatabase
)
gcg()
(in
Bio.SeqUtils.CheckSum
)
get_coord()
(in
Atom
)
get_sequence()
(in
Polypeptide
)
GenBank
(in
Bio
)
get_coords()
(in
Fragment
)
get_serial_number()
(in
Atom
)
GENBANK_INDENT
(in
Bio.GenBank
)
get_data()
(in
GraphData
)
get_sets()
(in
Track
)
GENBANK_SPACER
(in
Bio.GenBank
)
get_data()
(in
Node
)
get_sigatm()
(in
Atom
)
GenBankCdsFeatureIterator()
(in
Bio.SeqIO.InsdcIO
)
get_dbutils()
(in
BioSQL.DBUtils
)
get_siguij()
(in
Atom
)
GenBankDict
(in
Bio.SeqIO._index
)
get_demography_template()
(in
Bio.PopGen.SimCoal.Template
)
get_sprot_raw()
(in
Bio.ExPASy
)
GenBankIterator()
(in
Bio.SeqIO.InsdcIO
)
get_differing()
(in
PatternRepository
)
get_start_end()
(in
Bio.Nexus.Nexus
)
GenBankScanner
(in
Bio.GenBank.Scanner
)
get_drawn_levels()
(in
Diagram
)
get_status_list()
(in
PDBList
)
GenBankWriter
(in
Bio.SeqIO.InsdcIO
)
get_error()
(in
OutputLayer
)
get_step_2d()
(in
Bio.PopGen.SimCoal.Template
)
Gene
(in
Bio.NeuralNetwork
)
get_f_stats()
(in
EasyController
)
get_structure()
(in
MMCIFParser
)
GENE()
(in
_RecordConsumer
)
get_feature()
(in
Feature
)
get_structure()
(in
PDBParser
)
GENE_ID()
(in
_RecordConsumer
)
get_feature_sigil()
(in
CircularDrawer
)
get_structure()
(in
StructureBuilder
)
gene_name()
(in
_RecordConsumer
)
get_feature_sigil()
(in
LinearDrawer
)
get_subseq_as_string()
(in
Adaptor
)
gene_name()
(in
_SequenceConsumer
)
get_features()
(in
FeatureSet
)
get_succ()
(in
Node
)
GenePop
(in
Bio.PopGen
)
get_file()
(in
DirectoryRetriever
)
get_surface()
(in
Bio.PDB.ResidueDepth'
)
GenePopController
(in
Bio.PopGen.GenePop.Controller
)
get_file()
(in
FileRetriever
)
get_tau_list()
(in
Polypeptide
)
General
(in
Bio.GA.Crossover
)
get_File_list()
(in
FileRetriever
)
get_taxa()
(in
Tree
)
General
(in
Bio.GA.Mutation
)
get_fis()
(in
EasyController
)
get_terminals()
(in
Tree
)
GeneralPoint
(in
Bio.GA.Crossover
)
get_full_id()
(in
Atom
)
get_theta_list()
(in
Polypeptide
)
GeneralPointCrossover
(in
Bio.GA.Crossover.GeneralPoint
)
get_full_id()
(in
Entity
)
get_top()
(in
PatternRepository
)
generate_index()
(in
CodonAdaptationIndex
)
get_fullname()
(in
Atom
)
get_top_percentage()
(in
PatternRepository
)
generate_island_mat()
(in
Bio.PopGen.SimCoal.Template
)
get_genotype_count()
(in
EasyController
)
get_tracks()
(in
Diagram
)
generate_join_events()
(in
Bio.PopGen.SimCoal.Template
)
get_graphs()
(in
GraphSet
)
get_trailer()
(in
PDBParser
)
generate_model()
(in
Bio.PopGen.SimCoal.Template
)
get_header()
(in
PDBParser
)
get_transformed()
(in
SVDSuperimposer
)
generate_null_mat()
(in
Bio.PopGen.SimCoal.Template
)
get_heterozygosity_info()
(in
EasyController
)
get_unique_parents()
(in
Bio.PDB.Selection
)
generate_simcoal_from_template()
(in
Bio.PopGen.SimCoal.Template
)
get_id()
(in
Node
)
get_unpacked_list()
(in
Chain
)
generate_ssm2d_mat()
(in
Bio.PopGen.SimCoal.Template
)
get_id()
(in
Atom
)
get_unpacked_list()
(in
Residue
)
GenerationEvolver
(in
Bio.GA.Evolver
)
get_id()
(in
DisorderedEntityWrapper
)
get_urls_by_index()
(in
NetCatch
)
Generic
(in
Bio.Align
)
get_id()
(in
Entity
)
get_urls_by_label()
(in
NetCatch
)
generic_alphabet
(in
Bio.Alphabet
)
get_id()
(in
Fragment
)
get_urls_by_range()
(in
NetCatch
)
generic_by_id
(in
Bio.Data.CodonTable
)
get_ids()
(in
FeatureSet
)
get_vector()
(in
Atom
)
generic_by_name
(in
Bio.Data.CodonTable
)
get_ids()
(in
GraphSet
)
get_xy_from_matrix()
(in
Bio.PopGen.SimCoal.Template
)
Generic_dbutils
(in
BioSQL.DBUtils
)
get_ids()
(in
Track
)
getAscendent()
(in
Node
)
generic_dna
(in
Bio.Alphabet
)
get_indices()
(in
KDTree
)
getAscendentFromSQL()
(in
Scop
)
generic_nucleotide
(in
Bio.Alphabet
)
get_init_rms()
(in
SVDSuperimposer
)
getAstralDomainsFromFile()
(in
Astral
)
generic_protein
(in
Bio.Alphabet
)
get_instance_by_name()
(in
Motif
)
getAstralDomainsFromSQL()
(in
Astral
)
generic_rna
(in
Bio.Alphabet
)
get_instance_by_name()
(in
MEMEMotif
)
getAtoms()
(in
SeqMap
)
generic_run()
(in
Bio.Application
)
get_interpro_entry()
(in
Bio.InterPro
)
getblock()
(in
DictionaryBuilder
)
generic_transcriber
(in
Bio.Transcribe
)
get_iterator()
(in
Entity
)
getChildren()
(in
Node
)
GenericASTBuilder
(in
Bio.Parsers.spark
)
get_iterator()
(in
StructureAlignment
)
getDescendents()
(in
Node
)
GenericASTMatcher
(in
Bio.Parsers.spark
)
get_level()
(in
Atom
)
getDescendentsFromSQL()
(in
Scop
)
GenericASTTraversal
(in
Bio.Parsers.spark
)
get_level()
(in
Entity
)
getDomainBySid()
(in
Scop
)
GenericASTTraversalPruningException
(in
Bio.Parsers.spark
)
get_levels()
(in
Diagram
)
getDomainFromSQL()
(in
Scop
)
GenericParser
(in
Bio.Parsers.spark
)
get_list()
(in
Entity
)
getDomains()
(in
Scop
)
GenericScanner
(in
Bio.Parsers.spark
)
get_maps()
(in
StructureAlignment
)
getfiles()
(in
RebaseUpdate
)
GenericTools
(in
Bio.GFF
)
get_markov_model()
(in
MarkovModelBuilder
)
getNodeBySunid()
(in
Scop
)
genetic
(in
Bio.SubsMat.MatrixInfo
)
get_motif_by_name()
(in
MASTRecord
)
getParent()
(in
Node
)
GeneticAlgorithmFinder
(in
Bio.NeuralNetwork.Gene.Schema
)
get_motif_by_name()
(in
MEMERecord
)
getRoot()
(in
Scop
)
GenomeDiagram
(in
Bio.Graphics
)
get_motif_by_name()
(in
MASTRecord
)
getSeq()
(in
Astral
)
Geo
(in
Bio
)
get_motif_by_name()
(in
MEMERecord
)
getSeqBySid()
(in
Astral
)
get()
(in
Crystal
)
get_motif_matches()
(in
MASTRecord
)
getSeqMap()
(in
SeqMapIndex
)
get()
(in
AmbiguousForwardTable
)
get_motif_matches()
(in
MASTRecord
)
getSimulation()
(in
SimCoalCache
)
get()
(in
NCBIDictionary
)
get_motif_matches_for_sequence()
(in
MASTRecord
)
GFF
(in
Bio
)
get()
(in
Dictionary
)
get_motif_matches_for_sequence()
(in
MASTRecord
)
gi()
(in
_FeatureConsumer
)
get()
(in
RestrictionBatch
)
get_multilocus_f_stats()
(in
EasyController
)
gi()
(in
_RecordConsumer
)
get()
(in
DictionaryBuilder
)
get_name()
(in
Atom
)
gonnet
(in
Bio.SubsMat.MatrixInfo
)
get()
(in
_IndexedSeqFileDict
)
get_occupancy()
(in
Atom
)
grant
(in
Bio.SubsMat.MatrixInfo
)
get()
(in
MissingTable
)
get_original_taxon_order()
(in
Nexus
)
Graph
(in
Bio.Pathway.Rep
)
get_alignment_length()
(in
Alignment
)
get_parent()
(in
Atom
)
Graph
(in
Bio.Pathway.Rep.Graph
)
get_all()
(in
PatternRepository
)
get_parent()
(in
DisorderedEntityWrapper
)
GraphData
(in
Bio.Graphics.GenomeDiagram._Graph
)
get_all_entries()
(in
PDBList
)
get_parent()
(in
Entity
)
Graphics
(in
Bio
)
get_all_obsolete()
(in
PDBList
)
get_phi_psi_list()
(in
Polypeptide
)
GraphSet
(in
Bio.Graphics.GenomeDiagram._GraphSet
)
get_all_primary_ids()
(in
BioSeqDatabase
)
get_prev()
(in
Node
)
gravy()
(in
ProteinAnalysis
)
get_all_seqs()
(in
Alignment
)
get_PrimarySeq_stream()
(in
BioSeqDatabase
)
greater
(in
Bio.Affy.CelFile
)
get_all_urls()
(in
NetCatch
)
get_prodoc_entry()
(in
Bio.ExPASy
)
greater
(in
Bio.distance
)
get_allele_frequency()
(in
EasyController
)
get_prosite_entry()
(in
Bio.ExPASy
)
greater_equal
(in
Bio.Affy.CelFile
)
get_alleles()
(in
EasyController
)
get_prosite_raw()
(in
Bio.ExPASy
)
greater_equal
(in
Bio.distance
)
get_alleles_all_pops()
(in
EasyController
)
get_radii()
(in
KDTree
)
group()
(in
PrositeMatch
)
get_altloc()
(in
Atom
)
get_random()
(in
PatternRepository
)
groups()
(in
PrositeMatch
)
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