Module FilteredReader
source code
Code for more fancy file handles (DEPRECATED).
This module is now deprecated, and will be removed in a future release
of Biopython.
Classes: Filtered is a decorator for File that allows the user to
filter the output on a line by line basis.
The FilteredReader module reads a file and applies a sequence of
filters to the input The constructor sets a default filter chain, but the
user can select another filter by setting
Bio.FilteredReader.filter_chain.
handle = open( "filename" ) filtered_reader =
Bio.FilteredReader( handle ) filtered_reader.filter_chain = [
remove_asterisks, replace_dot_with_dash ] filtered_reasder.read()
All filters in the chain must provide the same interface with a line
of text as the single input parameter and altered text as the return
value.
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dump_saved(name,
text,
j)
Used for debugging. |
source code
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__warningregistry__
- Value:
{ ( ' Bio.FilteredReader is deprecated, and will be removed in a future r
elease of Biopython. If you want to continue to use this code, please
get in contact with the developers via the mailing lists to avoid its
permanent removal from Biopython. ' ,
<type 'exceptions.DeprecationWarning'>,
33) : True}
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