Miscellaneous functions for dealing with sequences (obsolete?).
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translate(seq,
id=None)
Translate a sequence (DEPRECATED). |
source code
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translate_to_stop(seq,
id=None)
Translate a sequence up to the first in frame stop codon
(DEPRECATED). |
source code
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back_translate(seq,
id=None)
Back-translate a sequence (DEPRECATED). |
source code
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transcribe(seq)
Transcribe a sequence (DEPRECATED). |
source code
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back_transcribe(seq)
Back-transcribe a sequence (DEPRECATED). |
source code
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ungap(seq)
given a sequence with gap encoding, return the ungapped sequence |
source code
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reduce_sequence(seq,
reduction_table,
new_alphabet=None)
given an amino-acid sequence, return it in reduced alphabet form
based on the letter-translation table passed. |
source code
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