Module EZRetrieve
source code
This module contains code to access EZRetrieve (DEPRECATED).
This module is now deprecated, and will be removed in a future release
of Biopython.
This is a very simple interface to the EZRetrieve website described
in:
Zhang, H., Ramanathan, Y., Soteropoulos, P., Recce, M., and Tolias,
P.P. (2002). EZ-Retrieve: A web-server for batch retrieval of
coordinate-specified human DNA sequences and underscoring putative
transcription factor-binding sites. Nucl. Acids. Res. 2002 30: e121.
http://dx.doi.org/10.1093/nar/gnf120
Functions: retrieve_single Retrieve a single sequence from
EZRetrieve. parse_single Parse the results from EZRetrieve into FASTA
format.
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retrieve_single(id,
from_,
to,
retrieve_by=None,
organism=None,
parse_results=1) |
source code
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Return a FASTA-formatted string for the sequence. May raise an
AssertionError if there was a problem retrieving the sequence.
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__warningregistry__
- Value:
{ ( ' Bio.EZRetrieve is deprecated, and will be removed in a future relea
se of Biopython. If you want to continue to use this code, please get
in contact with the Biopython developers via the mailing lists to avo
id its permanent removal from Biopython. ' ,
<type 'exceptions.DeprecationWarning'>,
24) : True}
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