Package Bio :: Package Wise
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Package Wise

source code


Version: $Revision: 1.17 $

Submodules [hide private]

Functions [hide private]
 
_build_align_cmdline(cmdline, pair, output_filename, kbyte=None, force_type=None, quiet=False) source code
 
align(cmdline, pair, kbyte=None, force_type=None, dry_run=False, quiet=False, debug=False)
Returns a filehandle
source code
 
all_pairs(singles)
Generate pairs list for all-against-all alignments
source code
 
main() source code
 
_test(*args, **keywds) source code
Variables [hide private]
  __package__ = 'Bio.Wise'
Function Details [hide private]

all_pairs(singles)

source code 

Generate pairs list for all-against-all alignments

>>> all_pairs(range(4))
[(0, 1), (0, 2), (0, 3), (1, 2), (1, 3), (2, 3)]