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Interfaces.AlignmentWriter --+ | Interfaces.SequentialAlignmentWriter --+ | EmbossWriter
Emboss alignment writer (WORK IN PROGRESS).
Writes a simplfied version of the EMBOSS pairs/simple file format. A lot of the information their tools record in their headers is not available and is ommitted.
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Inherited from Inherited from |
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Use this to write any header. This method should be replaced by any derived class to do something useful.
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Use this to write any footer. This method should be replaced by any derived class to do something useful.
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Use this to write (another) single alignment to an open file. |
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