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Bio.SeqIO support for the "swiss" (aka SwissProt/UniProt) file format.
You are expected to use this module via the Bio.SeqIO functions. See also the Bio.SwissProt module which offers more than just accessing the sequences as SeqRecord objects.
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Breaks up a Swiss-Prot/UniProt file into SeqRecord objects. Every section from the ID line to the terminating // becomes a single SeqRecord with associated annotation and features. This parser is for the flat file "swiss" format as used by: * Swiss-Prot aka SwissProt * TrEMBL * UniProtKB aka UniProt Knowledgebase It does NOT read their new XML file format. http://www.expasy.org/sprot/ For consistency with BioPerl and EMBOSS we call this the "swiss" format. |
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