Package Bio :: Package Prosite :: Module Pattern
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Module Bio.Prosite.Pattern

Classes
Prosite  
PrositeAlphabet  
PrositeMatch  
PrositeTerm  

Function Summary
  compile(pattern)
  find_terms(pattern)
  pattern_mapping(prosite, mapping)
  prosite_to_grouped_re(pattern)
convert a valid Prosite pattern into an re with groups for each term
  prosite_to_re(pattern)
convert a valid Prosite pattern into an re string
  verify_pattern(pattern)
returns 1 if the Prosite pattern is syntactically correct, else 0
  _verify_test(infile)
verify the patterns from a Prosite file handle

Function Details

prosite_to_grouped_re(pattern)

convert a valid Prosite pattern into an re with groups for each term

prosite_to_re(pattern)

convert a valid Prosite pattern into an re string

verify_pattern(pattern)

returns 1 if the Prosite pattern is syntactically correct, else 0

_verify_test(infile)

verify the patterns from a Prosite file handle

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