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Package Bio :: Package NeuralNetwork :: Package Gene :: Module Motif :: Class MotifCoder |
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Convert motifs and a sequence into neural network representations.
This is designed to convert a sequence into a representation that can be fed as an input into a neural network. It does this by representing a sequence based the motifs present.Method Summary | |
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Initialize an input producer with motifs to look for. | |
Represent a sequence as a set of motifs. |
Method Details |
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__init__(self,
motifs)
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representation(self, sequence)Represent a sequence as a set of motifs. Arguments: o sequence - A Bio.Seq object to represent as a motif. This converts a sequence into a representation based on the motifs. The representation is returned as a list of the relative amount of each motif (number of times a motif occured divided by the total number of motifs in the sequence). The values in the list correspond to the input order of the motifs specified in the initializer. |
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