Class MEMEParser
AbstractParser
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MEMEParser
A parser for the text output of the MEME program.
Parses the output into an object of the MEMERecord class.
Methods:
parse (handle): parses the contents of the file handle passed to it.
Example:
f = open("meme.output.txt")
parser = MEMEParser()
meme_record = parser.parse(f)
for motif in meme_record.motifs:
for instance in motif.instances:
print instance.motif_name, instance.sequence_name, instance.strand, instance.pvalue
Method Summary |
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__init__ (self)
__init__ (self) |
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parse (self,
handle)
parse (self, handle) |
Inherited from AbstractParser |
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parse_file (self,
filename)
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parse_str (self,
string)
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__init__(self)
(Constructor)
__init__ (self)
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