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Package Bio :: Package Sequencing :: Module Ace :: Class _Scanner |
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Scans a ACE-formatted file
Methods: feed - Feed one ACE record.Method Summary | |
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Scans multiple lines of quality data and concatenates them. | |
Reads the data lines of a {} tag. | |
_scan_record(self,
uhandle,
consumer)
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Scans multiple lines of sequence data and concatenates them. | |
feed(self, handle, consumer) |
Method Details |
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_scan_bq_data(self, uhandle, consumer)Scans multiple lines of quality data and concatenates them. |
_scan_bracket_tags(self, uhandle)Reads the data lines of a {} tag. |
_scan_sequence_data(self, uhandle)Scans multiple lines of sequence data and concatenates them. |
feed(self, handle, consumer)feed(self, handle, consumer) Feed in ACE data for scanning. handle is a file-like object containing ACE data. consumer is a Consumer object that will receive events as the ACE data is scanned. |
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