Package Bio :: Package PDB :: Module PSEA
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Module PSEA

source code

Classes [hide private]
  PSEA
Functions [hide private]
 
run_psea(fname)
Run PSEA and return output filename.
source code
 
psea(pname)
Parse PSEA output file.
source code
 
psea2HEC(pseq)
Translate PSEA secondary structure string into HEC.
source code
 
annotate(m, ss_seq) source code
Variables [hide private]
  standard_aa_names = ['ALA', 'CYS', 'ASP', 'GLU', 'PHE', 'GLY',...
  to_one_letter_code = {'2AS': 'D', '3AH': 'H', '5HP': 'E', 'ACL...
Variables Details [hide private]

standard_aa_names

Value:
['ALA',
 'CYS',
 'ASP',
 'GLU',
 'PHE',
 'GLY',
 'HIS',
 'ILE',
...

to_one_letter_code

Value:
{'2AS': 'D',
 '3AH': 'H',
 '5HP': 'E',
 'ACL': 'R',
 'AGM': 'R',
 'AIB': 'A',
 'ALA': 'A',
 'ALM': 'A',
...