Package Bio :: Package dbdefs :: Module pdb
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Module pdb

source code

Variables [hide private]
  not_header_expr = AssertNot(Str("HEADER"))
  pdb_rcsb_cgi = CGIDB(name= "pdb-rcsb-cgi", cgi= "http://www.rc...
  pdb_ebi_cgi = CGIDB(name= "pdb-ebi-cgi", cgi= "http://www.ebi....
  pdb = DBGroup(name= "pdb", behavior= "serial")
Variables Details [hide private]

pdb_rcsb_cgi

Value:
CGIDB(name= "pdb-rcsb-cgi", cgi= "http://www.rcsb.org/pdb/cgi/export.c\
gi", url= "XXX PLEASE FILL THIS IN XXX", delay= 5.0, params= [("format\
", "PDB"), ("compression", "None")], key= "pdbId", failure_cases= [(no\
t_header_expr, "results do not look like PDB format")])

pdb_ebi_cgi

Value:
CGIDB(name= "pdb-ebi-cgi", cgi= "http://www.ebi.ac.uk/cgi-bin/dbfetch"\
, url= "http://www.ebi.ac.uk/cgi-bin/dbfetch", delay= 5.0, params= [("\
db", "PDB"), ("format", "default"), ("style", "raw"),], key= "id", fai\
lure_cases= [(not_header_expr, "results do not look like PDB format")]\
)