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This module provides code to work with files from Rebase. http://rebase.neb.com/rebase/rebase.html
Classes: Record Holds rebase sequence data. Iterator Iterates over sequence data in a rebase file. Dictionary Accesses a rebase file using a dictionary interface. RecordParser Parses rebase sequence data into a Record object.
_Scanner Scans a rebase-format stream. _RecordConsumer Consumes rebase data to a Record object.
Functions: index_file Index a FASTA file for a Dictionary.
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Record Holds information from a FASTA record. |
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Iterator Returns one record at a time from a Rebase file. |
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Dictionary Accesses a rebase file using a dictionary interface. |
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RecordParser Parses FASTA sequence data into a Record object. |
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_Scanner Scans a rebase file. |
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_RecordConsumer Consumer that converts a rebase record to a Record object. |
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__warningregistry__ =
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xml_support = 1
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index_file(filename, ind/exname, rec2key=None) Index a rebase file. filename is the name of the file. indexname is the name of the dictionary. rec2key is an optional callback that takes a Record and generates a unique key (e.g. the accession number) for the record. If not specified, the sequence title will be used. |
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__warningregistry__
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