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This module provides code to work with files from Gobase. http://megasun.bch.umontreal.ca/gobase/
Classes: Record Holds gobase sequence data. Iterator Iterates over sequence data in a gobase file. Dictionary Accesses a gobase file using a dictionary interface. RecordParser Parses gobase sequence data into a Record object.
_Scanner Scans a gobase-format stream. _RecordConsumer Consumes gobase data to a Record object.
Functions: index_file Index a FASTA file for a Dictionary.
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Record Holds information from a Gobase record. |
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SequenceRecord Holds information from a Gobase record. |
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GeneRecord Holds information from a Gobase record. |
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ProteinRecord Holds information from a Gobase record. |
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Iterator Returns one record at a time from a Gobase file. |
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Dictionary Accesses a gobase file using a dictionary interface. |
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RecordParser Parses Gobase sequence data into a Record object. |
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_Scanner Scans a gobase file. |
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_RecordConsumer Consumer that converts a gobase record to a Record object. |
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__warningregistry__ =
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xml_support = 1
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index_file(filename, ind/exname, rec2key=None) Index a gobase file. filename is the name of the file. indexname is the name of the dictionary. rec2key is an optional callback that takes a Record and generates a unique key (e.g. the accession number) for the record. If not specified, the sequence title will be used. |
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__warningregistry__
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