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_
]
F
fabs
(in
Bio.Affy.CelFile
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.LogisticRegression
)
fabs
(in
Bio.LogisticRegression
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.MarkovModel
)
fabs
(in
Bio.MarkovModel
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.MaxEntropy
)
fabs
(in
Bio.MaxEntropy
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.NaiveBayes
)
fabs
(in
Bio.NaiveBayes
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.Statistics.lowess
)
fabs
(in
Bio.Statistics.lowess
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.distance
)
fabs
(in
Bio.distance
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.kNN
)
fabs
(in
Bio.kNN
)
feed()
(in
_Scanner
)
flush()
(in
BerkeleyDB
)
FAILURE
(in
Martel.msre_constants
)
feed()
(in
_Scanner
)
flush()
(in
MemoryFlatDB
)
FAILURE
(in
Martel.msre_parse
)
feed()
(in
_Scanner
)
fmod
(in
Bio.Affy.CelFile
)
False
(in
Bio.EUtils.POM
)
feed()
(in
_Scanner
)
fmod
(in
Bio.LogisticRegression
)
family_header
(in
Bio.expressions.hmmpfam
)
feng
(in
Bio.SubsMat.MatrixInfo
)
fmod
(in
Bio.MarkovModel
)
family_hit_line
(in
Bio.expressions.hmmpfam
)
fetch()
(in
PublicationFetchMixin
)
fmod
(in
Bio.MaxEntropy
)
fast_dbxref()
(in
Bio.Std
)
fetch_dbid_by_dbname()
(in
Adaptor
)
fmod
(in
Bio.NaiveBayes
)
fast_DR_embl
(in
Bio.expressions.swissprot.sprot38
)
fetch_seqid_by_accession()
(in
Adaptor
)
fmod
(in
Bio.Statistics.lowess
)
fast_DR_general
(in
Bio.expressions.swissprot.sprot38
)
fetch_seqid_by_display_id()
(in
Adaptor
)
fmod
(in
Bio.distance
)
fast_DR_prosite
(in
Bio.expressions.swissprot.sprot38
)
fetch_seqid_by_identifier()
(in
Adaptor
)
fmod
(in
Bio.kNN
)
Fasta
(in
Bio
)
fetch_seqid_by_version()
(in
Adaptor
)
ForgivingDictionary
fasta
(in
Bio.dbdefs
)
fetch_seqids_by_accession()
(in
Adaptor
)
format
(in
Bio.expressions.blast.ncbiblast
)
fasta
(in
Bio.dbdefs.fasta
)
fff_rec
(in
Bio.FSSP.fssp_rec
)
format
(in
Bio.expressions.blast.wublast
)
fasta
(in
Bio.expressions
)
FH_block
(in
Bio.expressions.embl.embl65
)
format
(in
Bio.expressions.blocks
)
fasta
(in
Bio.formatdefs.sequence
)
Field
(in
Bio.EUtils.DTDs.eInfo_020511
)
format
(in
Bio.expressions.embl.embl65
)
fasta
(in
Bio.writers.SeqRecord
)
Field
(in
Bio.EUtils.DTDs.eSearch_020511
)
format
(in
Bio.expressions.fasta
)
fasta_mult_align()
(in
FSSPAlignDict
)
FieldNotFound
(in
Bio.EUtils.DTDs.eSearch_020511
)
format
(in
Bio.expressions.genbank
)
fasta_sequence_eutils
(in
Bio.dbdefs.fasta
)
FieldNotFound
(in
Bio.EUtils.Datatypes
)
format
(in
Bio.expressions.hmmpfam
)
fasta_uniqids()
(in
Bio.SeqUtils
)
File
(in
Bio
)
format
(in
Bio.expressions.swissprot.ipi
)
FastaAlign
(in
Bio.Fasta
)
FiledList
(in
Bio.EUtils.DTDs.eInfo_020511
)
format
(in
Bio.expressions.swissprot.speclist
)
FastaAlignment
(in
Bio.Fasta.FastaAlign
)
FileIndex
(in
Bio.SCOP
)
format
(in
Bio.expressions.swissprot.sprot38
)
FastacmdCommandline
(in
Bio.Blast.Applications
)
FileIndex
(in
Bio.SCOP.FileIndex
)
format
(in
Bio.expressions.swissprot.sprot40
)
FastaIO
(in
Bio.AlignIO
)
FileRetriever
(in
Bio.PopGen.Async
)
format
(in
Bio.expressions.transfac
)
FastaIO
(in
Bio.SeqIO
)
files
(in
Bio.expressions.hmmpfam
)
format
(in
Martel.test.test_swissprot38
)
FastaIterator()
(in
Bio.SeqIO.FastaIO
)
fill_chromosome()
(in
ChromosomeCounts
)
format
(in
Martel.test.testformats.swissprot38
)
FastaM10Iterator
(in
Bio.AlignIO.FastaIO
)
fill_header()
(in
FSSPHeader
)
format()
(in
RestrictionBatch
)
FastaWriter
(in
Bio.SeqIO.FastaIO
)
fill_hot_cache()
(in
HotCache
)
format_alignment()
(in
Bio.pairwise2
)
FastFeature
(in
Martel.Expression
)
filter
(in
Bio.expressions.swissprot
)
format_expression
(in
Bio.expressions.blocks
)
fatalError()
(in
RecognizeHandler
)
filter()
(in
Bio.FSSP.FSSPTools
)
format_expression
(in
Bio.expressions.embl.embl65
)
fatalError()
(in
StoreEvents
)
filter()
(in
FilteredReader
)
format_expression
(in
Bio.expressions.swissprot.ipi
)
fatalError()
(in
Dump
)
FilteredReader
(in
Bio
)
format_expression
(in
Bio.expressions.swissprot.sprot38
)
fatalError()
(in
CountErrors
)
FilteredReader
(in
Bio.FilteredReader
)
format_expression
(in
Bio.expressions.swissprot.sprot40
)
fcmp()
(in
Bio.mathfns
)
finalize_options()
(in
run_local_tests
)
format_expression
(in
Martel.test.test_swissprot38
)
FDist
(in
Bio.PopGen
)
find()
(in
ElementNode
)
format_expression
(in
Martel.test.testformats.swissprot38
)
FDistAsync
(in
Bio.PopGen.FDist.Async
)
find()
(in
MotifFinder
)
FormatConvert
(in
Bio.Align
)
FDistController
(in
Bio.PopGen.FDist.Controller
)
find()
(in
SchemaFinder
)
FormatConverter
(in
Bio.Align.FormatConvert
)
Feature
(in
Bio.GFF
)
find()
(in
SignatureFinder
)
formatdefs
(in
Bio
)
Feature
(in
Bio.GenBank.Record
)
find()
(in
Biblio
)
FormatGroup
(in
Bio.config.FormatRegistry
)
Feature
(in
Bio.StdHandler
)
find()
(in
Bio.triefind
)
FormatObject
(in
Bio.config.FormatRegistry
)
feature
(in
Bio.expressions.embl.embl65
)
find_ambiguous()
(in
Schema
)
FormatRegistry
(in
Bio.config
)
feature
(in
Bio.expressions.genbank
)
find_anychar()
(in
Bio.stringfns
)
FormatRegistry
(in
Bio.config.FormatRegistry
)
feature()
(in
Bio.Std
)
find_builder()
(in
FormatRegistry
)
formats
(in
Bio.config.FormatRegistry
)
feature_block
(in
Bio.expressions.genbank
)
find_differences()
(in
MotifFinder
)
formats
(in
Martel
)
feature_block
(in
Bio.expressions.swissprot.sprot38
)
find_differences()
(in
SchemaFinder
)
FormattedSeq
(in
Bio.Restriction.Restriction
)
feature_block
(in
Martel.test.test_swissprot38
)
find_elements()
(in
ElementNode
)
forward_algorithm()
(in
AbstractDPAlgorithms
)
feature_block
(in
Martel.test.testformats.swissprot38
)
find_matches()
(in
Schema
)
forward_gc()
(in
_Primer3RecordConsumer
)
feature_block()
(in
Bio.Std
)
find_related()
(in
Bio.PubMed
)
forward_length()
(in
_Primer3RecordConsumer
)
feature_description()
(in
Bio.Std
)
find_schemas()
(in
GeneticAlgorithmFinder
)
forward_line
(in
Bio.Emboss.primer3_format
)
FEATURE_END_MARKERS
(in
EmblScanner
)
find_start()
(in
InsdcScanner
)
forward_primer_gc
(in
Bio.Emboss.primer3_format
)
FEATURE_END_MARKERS
(in
GenBankScanner
)
find_states()
(in
Bio.MarkovModel
)
forward_primer_length
(in
Bio.Emboss.primer3_format
)
FEATURE_END_MARKERS
(in
InsdcScanner
)
find_submodules()
(in
Bio.config._support
)
forward_primer_seq
(in
Bio.Emboss.primer3_format
)
feature_key
(in
Bio.expressions.genbank
)
find_terms()
(in
Bio.Prosite.Pattern
)
forward_primer_start
(in
Bio.Emboss.primer3_format
)
feature_key()
(in
_FeatureConsumer
)
find_words()
(in
Bio.triefind
)
forward_primer_tm
(in
Bio.Emboss.primer3_format
)
feature_key()
(in
_RecordConsumer
)
find_writer()
(in
FormatRegistry
)
forward_seq()
(in
_Primer3RecordConsumer
)
FEATURE_KEY_INDENT
(in
Bio.GenBank
)
finditer()
(in
FormattedSeq
)
forward_start()
(in
_Primer3RecordConsumer
)
FEATURE_KEY_INDENT
(in
Bio.expressions.genbank
)
findseqname()
(in
Location
)
forward_strand_info
(in
Bio.Emboss.primersearch_format
)
feature_key_line
(in
Bio.expressions.genbank
)
findseqname_3prime()
(in
Location
)
forward_table
(in
CodonTable
)
FEATURE_KEY_SPACER
(in
Bio.GenBank
)
findside()
(in
Location
)
forward_tm()
(in
_Primer3RecordConsumer
)
feature_location()
(in
Bio.Std
)
fitch
(in
Bio.SubsMat.MatrixInfo
)
found_antigen()
(in
Immune
)
feature_location_end()
(in
Bio.Std
)
five_prime()
(in
Location
)
FOUND_SITES_LINE
(in
Bio.expressions.transfac
)
feature_location_start()
(in
Bio.Std
)
fix()
(in
Crystal
)
foundMatch()
(in
GenericASTMatcher
)
feature_name()
(in
Bio.Std
)
fix_punctuation()
(in
Bio.FilteredReader
)
fq_dbxref
(in
Bio.expressions.embl.embl65
)
feature_qualifier
(in
Bio.expressions.embl.embl65
)
FixDocumentBuilder
(in
Bio.Mindy.SimpleSeqRecord
)
fq_generic
(in
Bio.expressions.embl.embl65
)
feature_qualifier()
(in
Bio.Std
)
FIXED
(in
Bio.EUtils.POM
)
Fragment
(in
Bio.PDB.FragmentMapper'
)
feature_qualifier_description()
(in
_FeatureConsumer
)
fixspaces()
(in
Bio.Decode
)
FragmentMapper
(in
Bio.PDB.FragmentMapper'
)
feature_qualifier_description()
(in
_RecordConsumer
)
flag_disorder()
(in
Atom
)
FragmentMapper'
(in
Bio.PDB
)
feature_qualifier_description()
(in
Bio.Std
)
flag_disordered()
(in
Residue
)
Fragments
FEATURE_QUALIFIER_INDENT
(in
Bio.GenBank
)
FLAGS
(in
Martel.msre_parse
)
frame
(in
Bio.expressions.blast.ncbiblast
)
FEATURE_QUALIFIER_INDENT
(in
EmblScanner
)
FlatDB
(in
Bio.Mindy
)
frame()
(in
_HSPConsumer
)
FEATURE_QUALIFIER_INDENT
(in
GenBankScanner
)
flatten()
(in
Multicall
)
frameshift()
(in
_ParametersConsumer
)
FEATURE_QUALIFIER_INDENT
(in
InsdcScanner
)
Flex
(in
Bio.SeqUtils.ProtParamData
)
frameshift_info
(in
Bio.expressions.blast.ncbiblast
)
FEATURE_QUALIFIER_INDENT
(in
Bio.expressions.genbank
)
flexibility()
(in
ProteinAnalysis
)
FREQ
(in
Bio.SubsMat.FreqTable
)
feature_qualifier_name()
(in
_FeatureConsumer
)
Float
(in
Bio.Decode
)
FreqTable
(in
Bio.SubsMat
)
feature_qualifier_name()
(in
_RecordConsumer
)
Float()
(in
Martel
)
FreqTable
(in
Bio.SubsMat.FreqTable
)
feature_qualifier_name()
(in
Bio.Std
)
Float0
(in
Bio.Affy.CelFile
)
frequency()
(in
AbstractCut
)
FEATURE_QUALIFIER_SPACER
(in
Bio.GenBank
)
Float0
(in
Bio.LogisticRegression
)
From
(in
Bio.EUtils.DTDs.eSearch_020511
)
FEATURE_QUALIFIER_SPACER
(in
EmblScanner
)
Float0
(in
Bio.MarkovModel
)
from_dbids()
(in
DBIdsClient
)
FEATURE_QUALIFIER_SPACER
(in
GenBankScanner
)
Float0
(in
Bio.MaxEntropy
)
from_dbids()
(in
Bio.EUtils.DBIdsClient
)
FEATURE_QUALIFIER_SPACER
(in
InsdcScanner
)
Float0
(in
Bio.NaiveBayes
)
from_motifs()
(in
SchemaFactory
)
FEATURE_START_MARKERS
(in
EmblScanner
)
Float0
(in
Bio.PDB.FragmentMapper'
)
from_parser()
(in
Bio.DBXRef
)
FEATURE_START_MARKERS
(in
GenBankScanner
)
Float0
(in
Bio.PDB.PDBParser'
)
from_signatures()
(in
SchemaFactory
)
FEATURE_START_MARKERS
(in
InsdcScanner
)
Float0
(in
Bio.PDB.Superimposer'
)
FSSP
(in
Bio
)
feature_table()
(in
_RecordConsumer
)
Float0
(in
Bio.Statistics.lowess
)
fssp_rec
(in
Bio.FSSP
)
FeatureAggregate
(in
Bio.GFF
)
Float0
(in
Bio.distance
)
FSSPAlign
(in
Bio.FSSP.FSSPTools
)
FeatureDict
Float0
(in
Bio.kNN
)
FSSPAlignDict
(in
Bio.FSSP
)
FeatureLocation
(in
Bio.SeqFeature
)
Float16
(in
Bio.Affy.CelFile
)
FSSPAlignRec
(in
Bio.FSSP
)
FeatureName
(in
Bio.GenBank.LocationParser
)
Float16
(in
Bio.LogisticRegression
)
FSSPHeader
(in
Bio.FSSP
)
FeatureParser
Float16
(in
Bio.MarkovModel
)
FSSPMultAlign
(in
Bio.FSSP.FSSPTools
)
FeatureQuery
(in
Bio.GFF
)
Float16
(in
Bio.MaxEntropy
)
FSSPSumDict
(in
Bio.FSSP
)
FeatureQueryRow
(in
Bio.GFF
)
Float16
(in
Bio.NaiveBayes
)
FSSPSumRec
(in
Bio.FSSP
)
features
(in
DBSeqRecord
)
Float16
(in
Bio.Statistics.lowess
)
FSSPTools
(in
Bio.FSSP
)
features()
(in
Segment
)
Float16
(in
Bio.distance
)
FT
(in
Bio.expressions.swissprot.sprot38
)
features()
(in
Expression
)
Float16
(in
Bio.kNN
)
FT
(in
Martel.test.test_swissprot38
)
features()
(in
ExpressionList
)
Float32
(in
Bio.Affy.CelFile
)
FT
(in
Martel.test.testformats.swissprot38
)
features()
(in
FastFeature
)
Float32
(in
Bio.LogisticRegression
)
FT_block
(in
Bio.expressions.embl.embl65
)
features()
(in
Group
)
Float32
(in
Bio.MarkovModel
)
FT_continuation
(in
Bio.expressions.swissprot.sprot38
)
features()
(in
HeaderFooter
)
Float32
(in
Bio.MaxEntropy
)
FT_continuation
(in
Martel.test.test_swissprot38
)
features()
(in
MaxRepeat
)
Float32
(in
Bio.NaiveBayes
)
FT_continuation
(in
Martel.test.testformats.swissprot38
)
features()
(in
ParseRecords
)
Float32
(in
Bio.Statistics.lowess
)
FT_desc
(in
Bio.expressions.swissprot.sprot38
)
features()
(in
PassThrough
)
Float32
(in
Bio.distance
)
FT_end
(in
Bio.expressions.swissprot.sprot38
)
features_line
(in
Bio.expressions.genbank
)
Float32
(in
Bio.kNN
)
FT_name
(in
Bio.expressions.swissprot.sprot38
)
features_line()
(in
_FeatureConsumer
)
Float64
(in
Bio.Affy.CelFile
)
FT_range
(in
Bio.expressions.swissprot.sprot38
)
features_line()
(in
_RecordConsumer
)
Float64
(in
Bio.LogisticRegression
)
FT_range
(in
Martel.test.test_swissprot38
)
FeatureValueCleaner
(in
Bio.GenBank.utils
)
Float64
(in
Bio.MarkovModel
)
FT_range
(in
Martel.test.testformats.swissprot38
)
feed()
(in
CelScanner
)
Float64
(in
Bio.MaxEntropy
)
FT_start
(in
Bio.expressions.swissprot.sprot38
)
feed()
(in
AlignAceScanner
)
Float64
(in
Bio.NaiveBayes
)
ftp_emb_e
(in
Bio.Restriction.RanaConfig
)
feed()
(in
CompareAceScanner
)
Float64
(in
Bio.Statistics.lowess
)
ftp_emb_r
(in
Bio.Restriction.RanaConfig
)
feed()
(in
_Scanner
)
Float64
(in
Bio.distance
)
ftp_emb_s
(in
Bio.Restriction.RanaConfig
)
feed()
(in
_Scanner
)
Float64
(in
Bio.kNN
)
ftp_proxy
(in
Bio.Restriction.RanaConfig
)
feed()
(in
_Scanner
)
Float8
(in
Bio.Affy.CelFile
)
ftp_Rebase
(in
Bio.Restriction.RanaConfig
)
feed()
(in
_Scanner
)
Float8
(in
Bio.LogisticRegression
)
FtpNameError
(in
Bio.Restriction._Update.Update
)
feed()
(in
_Scanner
)
Float8
(in
Bio.MarkovModel
)
FtpPasswordError
(in
Bio.Restriction._Update.Update
)
feed()
(in
_Primer3Scanner
)
Float8
(in
Bio.MaxEntropy
)
full()
(in
Analysis
)
feed()
(in
_PrimerSearchScanner
)
Float8
(in
Bio.NaiveBayes
)
full_repr()
(in
ElementNode
)
feed()
(in
_Scanner
)
Float8
(in
Bio.Statistics.lowess
)
full_repr()
(in
IndentedText
)
feed()
(in
InsdcScanner
)
Float8
(in
Bio.distance
)
fullpath()
(in
ElementNode
)
feed()
(in
_Scanner
)
Float8
(in
Bio.kNN
)
fullpath()
(in
IndentedText
)
feed()
(in
_Scanner
)
float_param()
(in
Bio.expressions.blast.ncbiblast
)
Function
(in
Bio.Decode
)
feed()
(in
InterProParser
)
float_stat()
(in
Bio.expressions.blast.ncbiblast
)
Function
(in
Bio.GenBank.LocationParser
)
feed()
(in
_Scanner
)
floor
(in
Bio.Affy.CelFile
)
function_population()
(in
Bio.GA.Organism
)
feed()
(in
LocusLinkParser
)
floor
(in
Bio.LogisticRegression
)
FunctionCall
(in
Bio.Decode
)
feed()
(in
_MASTScanner
)
floor
(in
Bio.MarkovModel
)
FunctionCallChain
(in
Bio.Decode
)
feed()
(in
_MEMEScanner
)
floor
(in
Bio.MaxEntropy
)
FunctionHolder
(in
Bio.EUtils.sourcegen
)
feed()
(in
_Scanner
)
floor
(in
Bio.NaiveBayes
)
FunctionIndexer
(in
Bio.Mindy.SimpleSeqRecord
)
feed()
(in
_Scanner
)
floor
(in
Bio.Statistics.lowess
)
FunctionName
(in
Bio.Decode
)
feed()
(in
_Scanner
)
floor
(in
Bio.distance
)
FuzznucCommandline
(in
Bio.Emboss.Applications
)
feed()
(in
NdbParser
)
floor
(in
Bio.kNN
)
feed()
(in
ExtractUrls
)
floor_divide
(in
Bio.Affy.CelFile
)
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