Package Bio :: Package Rebase :: Class _Scanner
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Class _Scanner

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Scans a rebase file.

Methods: feed Feed in one rebase record.

Instance Methods [hide private]
 
feed(self, handle, consumer)
Feed in rebase data for scanning.
source code
 
_scan_line(self, uhandle) source code
 
_text_in(self, uhandle, text, count) source code
 
_scan_record(self, uhandle, consumer) source code
 
_scan_sequence(self, text, consumer) source code
 
_scan_methylation(self, text, consumer) source code
 
_scan_enzyme_num(self, text, consumer) source code
 
_scan_prototype(self, text, consumer) source code
 
_scan_source(self, text, consumer) source code
 
_scan_microorganism(self, text, consumer) source code
 
_scan_temperature(self, text, consumer) source code
 
_scan_date_entered(self, text, consumer) source code
 
_scan_date_modified(self, text, consumer) source code
 
_scan_Adeno2(self, text, consumer) source code
 
_scan_Lambda(self, text, consumer) source code
 
_scan_pBR322(self, text, consumer) source code
 
_scan_PhiX174(self, text, consumer) source code
 
_scan_SV40(self, text, consumer) source code
Method Details [hide private]

feed(self, handle, consumer)

source code 

Feed in rebase data for scanning. handle is a file-like object containing rebase data. consumer is a Consumer object that will receive events as the rebase data is scanned.