EpetraExt Package Browser (Single Doxygen Collection)
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Classes | |
class | AdvDiffReactOptModel |
PDE-constrained inverse problem based on a 2D discretization of a diffusion/reaction system. More... | |
class | AdvDiffReactOptModelCreator |
A utility class for creating an AdvDiffReactOptModelCreator/tt> object by reading from the command-line. More... | |
class | GLpYUEpetraDataPool |
class | Usr_Par |
Functions | |
std::ostream & | operator<< (std::ostream &, const Usr_Par &) |
bool | CrsMatrix2MATLAB (const Epetra_CrsMatrix &, std::ostream &) |
bool | Vector2MATLAB (const Epetra_Vector &, std::ostream &) |
bool | FEVector2MATLAB (const Epetra_FEVector &, std::ostream &) |
int | quadrature (const int, const int, Epetra_SerialDenseMatrix &, Epetra_SerialDenseVector &) |
int | meshreader (const Epetra_Comm &, Epetra_IntSerialDenseVector &, Epetra_SerialDenseMatrix &, Epetra_IntSerialDenseVector &, Epetra_SerialDenseMatrix &, Epetra_IntSerialDenseMatrix &, Epetra_IntSerialDenseMatrix &, const char geomFileBase[], const bool trace=true, const bool dumpAll=false) |
int | lassembly (const Epetra_SerialDenseMatrix &, const Epetra_SerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_SerialDenseVector &, const Epetra_SerialDenseVector &, const Usr_Par &, Epetra_SerialDenseMatrix &, Epetra_SerialDenseVector &) |
int | assemblyFECrs (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RCP< Epetra_FECrsMatrix > &, Teuchos::RCP< Epetra_FEVector > &) |
int | assemblyFECrs (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RCP< Epetra_FECrsMatrix > &, Teuchos::RCP< Epetra_FEVector > &, bool) |
int | assemble (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RCP< Epetra_FECrsMatrix > &, Teuchos::RCP< Epetra_FECrsMatrix > &, Teuchos::RCP< Epetra_FEVector > &) |
int | assemble_bdry (const Epetra_Comm &Comm, const Epetra_IntSerialDenseVector &ipindx, const Epetra_SerialDenseMatrix &ipcoords, const Epetra_IntSerialDenseVector &pindx, const Epetra_SerialDenseMatrix &pcoords, const Epetra_IntSerialDenseMatrix &t, const Epetra_IntSerialDenseMatrix &e, Teuchos::RCP< Epetra_FECrsMatrix > *B, Teuchos::RCP< Epetra_FECrsMatrix > *R) |
int | nonlinvec (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RCP< const Epetra_MultiVector > &, Teuchos::RCP< Epetra_FEVector > &) |
int | nonlinjac (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RCP< const Epetra_MultiVector > &, Teuchos::RCP< Epetra_FECrsMatrix > &) |
int | nonlinhessvec (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RCP< const Epetra_MultiVector > &, const Teuchos::RCP< const Epetra_MultiVector > &, const Teuchos::RCP< const Epetra_MultiVector > &, Teuchos::RCP< Epetra_FEVector > &) |
int | compproduct (Epetra_SerialDenseVector &, double *, double *) |
int | compproduct (Epetra_SerialDenseVector &, double *, double *, double *) |
double | determinant (const Epetra_SerialDenseMatrix &) |
int | inverse (const Epetra_SerialDenseMatrix &, Epetra_SerialDenseMatrix &) |
void | gpfctn (const Epetra_SerialDenseVector &v, Epetra_SerialDenseVector &gv) |
void | g2pfctn (const Epetra_SerialDenseVector &, Epetra_SerialDenseVector &) |
void | gfctn (const Epetra_SerialDenseVector &, Epetra_SerialDenseVector &) |
void | rect2DMeshGenerator (const int numProc, const int procRank, const double len_x, const double len_y, const int local_nx, const int local_ny, const int bndy_marker, Epetra_IntSerialDenseVector *ipindx_out, Epetra_SerialDenseMatrix *ipcoords_out, Epetra_IntSerialDenseVector *pindx_out, Epetra_SerialDenseMatrix *pcoords_out, Epetra_IntSerialDenseMatrix *t_out, Epetra_IntSerialDenseMatrix *e_out, std::ostream *out, const bool dumpAll) |
Generate a simple rectangular 2D triangular mesh that is only partitioned between processors in the y direction. More... | |
Variables | |
const double | GLp_pi = 3.14159265358979323846 |
std::ostream & GLpApp::operator<< | ( | std::ostream & | out, |
const Usr_Par & | usr_par | ||
) |
Definition at line 816 of file GLpApp_GLpYUEpetraDataPool.cpp.
bool GLpApp::CrsMatrix2MATLAB | ( | const Epetra_CrsMatrix & | A, |
std::ostream & | outfile | ||
) |
Definition at line 2127 of file GLpApp_GLpYUEpetraDataPool.cpp.
bool GLpApp::Vector2MATLAB | ( | const Epetra_Vector & | v, |
std::ostream & | outfile | ||
) |
Definition at line 2229 of file GLpApp_GLpYUEpetraDataPool.cpp.
bool GLpApp::FEVector2MATLAB | ( | const Epetra_FEVector & | v, |
std::ostream & | outfile | ||
) |
Definition at line 2297 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::quadrature | ( | const int | dim, |
const int | order, | ||
Epetra_SerialDenseMatrix & | nodes, | ||
Epetra_SerialDenseVector & | weights | ||
) |
Definition at line 2358 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::meshreader | ( | const Epetra_Comm & | Comm, |
Epetra_IntSerialDenseVector & | ipindx, | ||
Epetra_SerialDenseMatrix & | ipcoords, | ||
Epetra_IntSerialDenseVector & | pindx, | ||
Epetra_SerialDenseMatrix & | pcoords, | ||
Epetra_IntSerialDenseMatrix & | t, | ||
Epetra_IntSerialDenseMatrix & | e, | ||
const char | geomFileBase[], | ||
const bool | trace = true , |
||
const bool | dumpAll = false |
||
) |
Definition at line 1553 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::lassembly | ( | const Epetra_SerialDenseMatrix & | vertices, |
const Epetra_SerialDenseVector & | k, | ||
const Epetra_SerialDenseMatrix & | c, | ||
const Epetra_SerialDenseVector & | r, | ||
const Epetra_SerialDenseVector & | f, | ||
const Usr_Par & | usr_par, | ||
Epetra_SerialDenseMatrix & | At, | ||
Epetra_SerialDenseVector & | bt | ||
) |
Definition at line 1414 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::assemblyFECrs | ( | const Epetra_Comm & | , |
const Epetra_IntSerialDenseVector & | , | ||
const Epetra_SerialDenseMatrix & | , | ||
const Epetra_IntSerialDenseVector & | , | ||
const Epetra_SerialDenseMatrix & | , | ||
const Epetra_IntSerialDenseMatrix & | , | ||
const Epetra_IntSerialDenseMatrix & | , | ||
Teuchos::RCP< Epetra_FECrsMatrix > & | , | ||
Teuchos::RCP< Epetra_FEVector > & | |||
) |
int GLpApp::assemblyFECrs | ( | const Epetra_Comm & | , |
const Epetra_IntSerialDenseVector & | , | ||
const Epetra_SerialDenseMatrix & | , | ||
const Epetra_IntSerialDenseVector & | , | ||
const Epetra_SerialDenseMatrix & | , | ||
const Epetra_IntSerialDenseMatrix & | , | ||
const Epetra_IntSerialDenseMatrix & | , | ||
Teuchos::RCP< Epetra_FECrsMatrix > & | , | ||
Teuchos::RCP< Epetra_FEVector > & | , | ||
bool | |||
) |
int GLpApp::assemble | ( | const Epetra_Comm & | Comm, |
const Epetra_IntSerialDenseVector & | ipindx, | ||
const Epetra_SerialDenseMatrix & | ipcoords, | ||
const Epetra_IntSerialDenseVector & | pindx, | ||
const Epetra_SerialDenseMatrix & | pcoords, | ||
const Epetra_IntSerialDenseMatrix & | t, | ||
const Epetra_IntSerialDenseMatrix & | e, | ||
Teuchos::RCP< Epetra_FECrsMatrix > & | A, | ||
Teuchos::RCP< Epetra_FECrsMatrix > & | M, | ||
Teuchos::RCP< Epetra_FEVector > & | b | ||
) |
Definition at line 1109 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::assemble_bdry | ( | const Epetra_Comm & | Comm, |
const Epetra_IntSerialDenseVector & | ipindx, | ||
const Epetra_SerialDenseMatrix & | ipcoords, | ||
const Epetra_IntSerialDenseVector & | pindx, | ||
const Epetra_SerialDenseMatrix & | pcoords, | ||
const Epetra_IntSerialDenseMatrix & | t, | ||
const Epetra_IntSerialDenseMatrix & | e, | ||
Teuchos::RCP< Epetra_FECrsMatrix > * | B, | ||
Teuchos::RCP< Epetra_FECrsMatrix > * | R | ||
) |
Definition at line 890 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::nonlinvec | ( | const Epetra_Comm & | Comm, |
const Epetra_IntSerialDenseVector & | ipindx, | ||
const Epetra_SerialDenseMatrix & | ipcoords, | ||
const Epetra_IntSerialDenseVector & | pindx, | ||
const Epetra_SerialDenseMatrix & | pcoords, | ||
const Epetra_IntSerialDenseMatrix & | t, | ||
const Teuchos::RCP< const Epetra_MultiVector > & | y, | ||
Teuchos::RCP< Epetra_FEVector > & | g | ||
) |
Definition at line 1990 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::nonlinjac | ( | const Epetra_Comm & | Comm, |
const Epetra_IntSerialDenseVector & | ipindx, | ||
const Epetra_SerialDenseMatrix & | ipcoords, | ||
const Epetra_IntSerialDenseVector & | pindx, | ||
const Epetra_SerialDenseMatrix & | pcoords, | ||
const Epetra_IntSerialDenseMatrix & | t, | ||
const Teuchos::RCP< const Epetra_MultiVector > & | y, | ||
Teuchos::RCP< Epetra_FECrsMatrix > & | Gp | ||
) |
Definition at line 1840 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::nonlinhessvec | ( | const Epetra_Comm & | Comm, |
const Epetra_IntSerialDenseVector & | ipindx, | ||
const Epetra_SerialDenseMatrix & | ipcoords, | ||
const Epetra_IntSerialDenseVector & | pindx, | ||
const Epetra_SerialDenseMatrix & | pcoords, | ||
const Epetra_IntSerialDenseMatrix & | t, | ||
const Teuchos::RCP< const Epetra_MultiVector > & | y, | ||
const Teuchos::RCP< const Epetra_MultiVector > & | s, | ||
const Teuchos::RCP< const Epetra_MultiVector > & | lambda, | ||
Teuchos::RCP< Epetra_FEVector > & | hessvec | ||
) |
Definition at line 1676 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::compproduct | ( | Epetra_SerialDenseVector & | product, |
double * | first, | ||
double * | second | ||
) |
Definition at line 828 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::compproduct | ( | Epetra_SerialDenseVector & | product, |
double * | first, | ||
double * | second, | ||
double * | third | ||
) |
Definition at line 837 of file GLpApp_GLpYUEpetraDataPool.cpp.
double GLpApp::determinant | ( | const Epetra_SerialDenseMatrix & | mat | ) |
Definition at line 1524 of file GLpApp_GLpYUEpetraDataPool.cpp.
int GLpApp::inverse | ( | const Epetra_SerialDenseMatrix & | mat, |
Epetra_SerialDenseMatrix & | inv | ||
) |
Definition at line 1500 of file GLpApp_GLpYUEpetraDataPool.cpp.
void GLpApp::gpfctn | ( | const Epetra_SerialDenseVector & | v, |
Epetra_SerialDenseVector & | gv | ||
) |
Definition at line 1952 of file GLpApp_GLpYUEpetraDataPool.cpp.
void GLpApp::g2pfctn | ( | const Epetra_SerialDenseVector & | v, |
Epetra_SerialDenseVector & | gv | ||
) |
Definition at line 1802 of file GLpApp_GLpYUEpetraDataPool.cpp.
void GLpApp::gfctn | ( | const Epetra_SerialDenseVector & | v, |
Epetra_SerialDenseVector & | gv | ||
) |
Definition at line 2100 of file GLpApp_GLpYUEpetraDataPool.cpp.
void GLpApp::rect2DMeshGenerator | ( | const int | numProc, |
const int | procRank, | ||
const double | len_x, | ||
const double | len_y, | ||
const int | local_nx, | ||
const int | local_ny, | ||
const int | bndy_marker, | ||
Epetra_IntSerialDenseVector * | ipindx_out, | ||
Epetra_SerialDenseMatrix * | ipcoords_out, | ||
Epetra_IntSerialDenseVector * | pindx_out, | ||
Epetra_SerialDenseMatrix * | pcoords_out, | ||
Epetra_IntSerialDenseMatrix * | t_out, | ||
Epetra_IntSerialDenseMatrix * | e_out, | ||
std::ostream * | out, | ||
const bool | dumpAll | ||
) |
Generate a simple rectangular 2D triangular mesh that is only partitioned between processors in the y
direction.
ToDo: Finish documentation!
Definition at line 52 of file rect2DMeshGenerator.cpp.
const double GLpApp::GLp_pi = 3.14159265358979323846 |
Definition at line 95 of file GLpApp_GLpYUEpetraDataPool.cpp.